Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04996 and RBAM_030660

See Amino acid alignment / Visit BSNT_04996 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:32
# Commandline: needle
#    -asequence dna-align/BSNT_04996___bdbD.1.9828.seq
#    -bsequence dna-align/RBAM_030660___bdbD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04996___bdbD-RBAM_030660___bdbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04996___bdbD-RBAM_030660___bdbD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04996___bdbD
# 2: RBAM_030660___bdbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 707
# Identity:     502/707 (71.0%)
# Similarity:   502/707 (71.0%)
# Gaps:          73/707 (10.3%)
# Score: 1806.0
# 
#
#=======================================

BSNT_04996___      1 GTGAAAAAGAAACAGCAGTCTTCTGCGAAATTCGCGGTCATCCTTACGGT     50
                     ||||||||||||   ||.||.|||||.|||||.|||||.||.||.|||.|
RBAM_030660__      1 GTGAAAAAGAAA---CAATCGTCTGCAAAATTTGCGGTGATTCTGACGTT     47

BSNT_04996___     51 TGTGGTTGTTGTATTGCTAGCAGCCATTGTCATCATTAATAACAAAACGG    100
                     ..|.|||||.||.||..|.||.|||||.||.||.|||||.|||.||||||
RBAM_030660__     48 AATCGTTGTCGTTTTATTTGCGGCCATCGTAATTATTAACAACCAAACGG     97

BSNT_04996___    101 AACAAG-----GTAATGATGCGGTGTCCGGGCAGCCGTCTATCAAAGGGC    145
                     ||.|||     |.||     |.||..|||..|||||.||.||.|||||.|
RBAM_030660__     98 AAAAAGCGGGCGAAA-----CAGTCGCCGAACAGCCTTCCATTAAAGGAC    142

BSNT_04996___    146 AGCCTGTGCTTGGCAAGGACGATGCACCGGTAACTGTAGTAGAATTCGGA    195
                     ||||.|||||.|||||.|||...||.||.||.||.|||||.|||||||||
RBAM_030660__    143 AGCCCGTGCTCGGCAAAGACAGCGCCCCTGTTACGGTAGTTGAATTCGGA    192

BSNT_04996___    196 GATTACAAATGTCCGTCTTGCAAGGTGTTTAACAGTGACATCTTTCCAAA    245
                     ||||||||.||||||||.|||||.||.||||||||.||.||||||||.||
RBAM_030660__    193 GATTACAAGTGTCCGTCATGCAAAGTATTTAACAGCGATATCTTTCCGAA    242

BSNT_04996___    246 AATACAAAAAGACTTTATTGATAAGGGCGATGTGAAATTTTCTTTCGTGA    295
                     |||..|||||||.|||||.|||||.|||||.|||||||||||.||.||||
RBAM_030660__    243 AATCAAAAAAGATTTTATCGATAAAGGCGACGTGAAATTTTCATTTGTGA    292

BSNT_04996___    296 ACGTCATGTTCCATGGAAAAGGTTCAAGGTTAGCGGCTCTTGCATCTGAA    345
                     ||||.||||.|||.||||..||.||..|..|.|||||||||||.||.|||
RBAM_030660__    293 ACGTTATGTACCACGGAAGCGGCTCGCGTCTGGCGGCTCTTGCTTCAGAA    342

BSNT_04996___    346 GAAGTATGGAAGGAAGACCCTGACTCTTTTTGGGATTTCCATGAAAAGCT    395
                     |||||.|||||.||||||||.|..||.||.||||..||||||||||||||
RBAM_030660__    343 GAAGTGTGGAAAGAAGACCCGGCATCATTCTGGGCATTCCATGAAAAGCT    392

BSNT_04996___    396 GTTCGAAAAACAGCCGGATACGGAACAGGAATGGGTAACCCCAGGCCT-C    444
                     |||.|||.|.||||||...|..||||||||||||||     ||.|||| |
RBAM_030660__    393 GTTTGAACAGCAGCCGTCAAGCGAACAGGAATGGGT-----CACGCCTGC    437

BSNT_04996___    445 CTTGGTGATCTTGCA---------AAAAGCACC---ACAAAGATAAAACC    482
                     .|||     ||||.|         |||||||||   |.||||.|..|.||
RBAM_030660__    438 ATTG-----CTTGAAAAAACGGTCAAAAGCACCGCGAAAAAGGTTGATCC    482

BSNT_04996___    483 TGAGACGCTCAAGGAAAATCTTGATAAGGAAACATTCGCTTCTCAAGTGG    532
                     |||.|.|||.||||||||.||||||||.||.|||||           ||.
RBAM_030660__    483 TGACAAGCTGAAGGAAAACCTTGATAAAGAGACATT-----------TGC    521

BSNT_04996___    533 AAAAG-----------GATTCTGACCTTAATCAAAAAATGAACA-TACAG    570
                     |||||           ||..|||||||.|||.|.|||.|.|||| ||| |
RBAM_030660__    522 AAAAGAGCTGAAAGCTGACACTGACCTGAATGATAAATTAAACATTAC-G    570

BSNT_04996___    571 GCAACACCGACGATTTACGTCAATGATAAAGTGATCAAAAATTTTGCGGA    620
                     ||.||||||||||||||.||.|||||.||||||||.||..|.||..|..|
RBAM_030660__    571 GCGACACCGACGATTTATGTAAATGACAAAGTGATTAATGACTTCTCTAA    620

BSNT_04996___    621 TTATGATGAAA--TCAAAGAGACAATAGAAAAAGAGCTGAAAGGGAAGTA    668
                     .||||||||.|  ||||  |.||.||..|.||||||||||||   ||..|
RBAM_030660__    621 ATATGATGAGATTTCAA--AAACGATTAAGAAAGAGCTGAAA---AATGA    665

BSNT_04996___    669 A------    669
                     |      
RBAM_030660__    666 AAAATAG    672


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