Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05089 and RBAM_030890

See Amino acid alignment / Visit BSNT_05089 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:34
# Commandline: needle
#    -asequence dna-align/BSNT_05089___smpB.1.9828.seq
#    -bsequence dna-align/RBAM_030890___smpB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05089___smpB-RBAM_030890___smpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05089___smpB-RBAM_030890___smpB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05089___smpB
# 2: RBAM_030890___smpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 472
# Identity:     402/472 (85.2%)
# Similarity:   402/472 (85.2%)
# Gaps:           2/472 ( 0.4%)
# Score: 1718.0
# 
#
#=======================================

BSNT_05089___      1 ATGCCAAAAGGGTCAGGAAAAGTATTATCTCAAAATAAGAAAGCCAATCA     50
                     |||||||||||.|||||.|||||||||||.|||||.||.|||||.||.||
RBAM_030890__      1 ATGCCAAAAGGATCAGGCAAAGTATTATCACAAAACAAAAAAGCAAACCA     50

BSNT_05089___     51 CGATTATTTTATAGAAGAAACCTATGAAACAGGCATCGTTCTGCAAGGAA    100
                     .|||||.||||||||||||||||||||||||||||||||.|||||.||||
RBAM_030890__     51 TGATTACTTTATAGAAGAAACCTATGAAACAGGCATCGTGCTGCAGGGAA    100

BSNT_05089___    101 CCGAAATCAAATCGATTCGCGCCGGCCGCGTAAACCTTAAGGATTCCTTC    150
                     |.||.||.||.||.||.||||||||||||||||||.|.|||||||||||.
RBAM_030890__    101 CAGAGATTAAGTCCATCCGCGCCGGCCGCGTAAACATGAAGGATTCCTTT    150

BSNT_05089___    151 GCCAAAATCGAACGGGGAGAAGTGTTTCTCCACAATATGCACGTCAGCCC    200
                     ||.||||||||.||.||.||||||||.||||||||.||||||.|||||||
RBAM_030890__    151 GCGAAAATCGAGCGCGGCGAAGTGTTCCTCCACAACATGCACATCAGCCC    200

BSNT_05089___    201 ATATGAGCAGGGAAACCGCTATAACCATGATCCGCTTCGGACAAGAAAGC    250
                     .||.|||||||||||||||||||||||.||.|||||.|||||.|||||||
RBAM_030890__    201 GTACGAGCAGGGAAACCGCTATAACCACGACCCGCTCCGGACGAGAAAGC    250

BSNT_05089___    251 TGTTAATGCACCGCAAGGAGATTAATAAGCTGATCGGGTTAACAAAGGAA    300
                     |.||.||||||.|.||.||.||.||||||||||||||..|.||.||.||.
RBAM_030890__    251 TTTTGATGCACAGGAAAGAAATCAATAAGCTGATCGGCCTGACGAAAGAG    300

BSNT_05089___    301 AAAGGCTATTCTCTCGTTCCGCTGAAGCTGTATTTAAAAAACGGCTTTGC    350
                     |||||.|||||.|||||.|||||||||||||||||.||||||||||||||
RBAM_030890__    301 AAAGGATATTCCCTCGTGCCGCTGAAGCTGTATTTGAAAAACGGCTTTGC    350

BSNT_05089___    351 CAAAGTGCTTCTCGGCCTTGGAAAAGGGAAGAAGAAC-TATGACAAACGG    399
                     |||||||.|..|||||||.|||||||||||||| ||| ||.||.|||||.
RBAM_030890__    351 CAAAGTGTTAATCGGCCTCGGAAAAGGGAAGAA-AACATACGATAAACGC    399

BSNT_05089___    400 GAAGATCTGAAGCGCAAGGACGCGAAGCGGGAAATCGAAAGAGCGTTCAG    449
                     ||||||.|.||.||.||.|||||.||..|.||||||||||||||||||||
RBAM_030890__    400 GAAGATTTAAAACGAAAAGACGCCAAAAGAGAAATCGAAAGAGCGTTCAG    449

BSNT_05089___    450 AGACAGTCAAAAAGGCTTCTAA    471
                     ||||||.|||||||||||||.|
RBAM_030890__    450 AGACAGACAAAAAGGCTTCTGA    471


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