Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05107 and RBAM_031020

See Amino acid alignment / Visit BSNT_05107 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:35
# Commandline: needle
#    -asequence dna-align/BSNT_05107___opuBD.1.9828.seq
#    -bsequence dna-align/RBAM_031020___opuBD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05107___opuBD-RBAM_031020___opuBD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05107___opuBD-RBAM_031020___opuBD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05107___opuBD
# 2: RBAM_031020___opuBD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 708
# Identity:     509/708 (71.9%)
# Similarity:   509/708 (71.9%)
# Gaps:          57/708 ( 8.1%)
# Score: 1858.5
# 
#
#=======================================

BSNT_05107___      1 ---------ATGAACGTGCTTGAACAGTTAATGACGTATTACGCGCAGAA     41
                              |||||.|.|||      ||   |.||||||||.||.||.||
RBAM_031020__      1 ATGGACACGATGAAGGAGCT------GT---TTACGTATTATGCTCAAAA     41

BSNT_05107___     42 TGGCAGTTACGTCATGGATGAATTCGGCCGCCACTTTCTCATGTCGGCTT     91
                     .||||||||.||..||.||||.|.|.|.||.|||||||||||||||||.|
RBAM_031020__     42 CGGCAGTTATGTTCTGTATGAGTGCTGGCGGCACTTTCTCATGTCGGCGT     91

BSNT_05107___     92 ACGGCGTATTGTGTGCCGCTGTCGTCGGGGTTCCGGCCGGAATCCTCATC    141
                     |||||||..|.|..|||||.||..|||...|||||||||||||..|.|..
RBAM_031020__     92 ACGGCGTCGTTTTCGCCGCCGTTTTCGCCATTCCGGCCGGAATTGTGACA    141

BSNT_05107___    142 GC---GCA-----TTTTCGCCGTTTGTCAGCCTGGGTGTTTGCCGTAACA    183
                     ||   |||     .|.|||||        |.||||||||||||.||..|.
RBAM_031020__    142 GCAAGGCACGGGCGTCTCGCC--------GGCTGGGTGTTTGCTGTGGCG    183

BSNT_05107___    184 AACGTTATTCAAACAATCCCGGCGCTCGCTATGCTGGCCGTCTTAATGCT    233
                     |||||.||||||||..|.||||||||.||.|||||.||||||.|.|||||
RBAM_031020__    184 AACGTGATTCAAACCGTTCCGGCGCTTGCGATGCTCGCCGTCCTGATGCT    233

BSNT_05107___    234 TGTTATGGGGCTCGGCGCAAATACCGTGATTCTATCA-----TTATTTCT    278
                     .||.|||||.||||||||.|||||.||     .||||     ||.|||.|
RBAM_031020__    234 CGTCATGGGACTCGGCGCCAATACGGT-----CATCACGGCTTTGTTTTT    278

BSNT_05107___    279 GTATTCCCTGCTGCCGATTATTCGAAACACGTACACAGGCATTATCAGTA    328
                     ||||||.||||||||||||.|..||||.|||.||||.||||||||||.||
RBAM_031020__    279 GTATTCACTGCTGCCGATTCTCAGAAATACGCACACGGGCATTATCAATA    328

BSNT_05107___    329 TTGAACATGCCTACTTAGAATCGGGAAAAGCAATGGGCATGACGAAATTC    378
                     |.||.||.||.||..|.||.||||||||.||.||||||||||||||||.|
RBAM_031020__    329 TCGAGCACGCTTATCTCGAGTCGGGAAAGGCGATGGGCATGACGAAATAC    378

BSNT_05107___    379 CAAGTGCTCAGAATGGTTGAGCTCCCGCTCGCACTTTCTGTCATTATGGC    428
                     |||.|.||..|.|||||.|||||.|||||.||.|||||.|||||||||||
RBAM_031020__    379 CAAATCCTTCGTATGGTGGAGCTGCCGCTTGCGCTTTCCGTCATTATGGC    428

BSNT_05107___    429 GGGCCTTCGCACGGCTCTCGTCATTGCCATTGGAATTACAGCGATCGGCA    478
                     |||.||.||.|||||.||||||||||||||.||.||.||.||||||||||
RBAM_031020__    429 GGGTCTCCGAACGGCGCTCGTCATTGCCATCGGCATCACGGCGATCGGCA    478

BSNT_05107___    479 CATTTGTCGGTGCCGGAGGCCTTGGGGACATGATTGTCCGCGGCTCAAAC    528
                     |.||.|||||.||.||.|||||.||.||.|||||.|||.|.||.||.|||
RBAM_031020__    479 CCTTCGTCGGGGCGGGCGGCCTCGGCGATATGATCGTCAGAGGGTCGAAC    528

BSNT_05107___    529 GCAACAAACGGAACTGCGATTATTCTAGCCGGAGCGATACCAACTGCGGT    578
                     ||.|||||||||||.||.||||||.|.||.||.||.||.||.||.|||.|
RBAM_031020__    529 GCGACAAACGGAACCGCCATTATTTTGGCGGGCGCCATCCCGACCGCGCT    578

BSNT_05107___    579 GATGGCGGTAGGGGCGGATTTGCTCATGGCCTGGCTGGAGCGGGCATTAA    628
                     |||||||||||..||.||..||||.|||||.||||||||.||.||..|.|
RBAM_031020__    579 GATGGCGGTAGCCGCAGACCTGCTGATGGCGTGGCTGGAACGAGCCCTCA    628

BSNT_05107___    629 GTCCGGTGAAGAAAAAAAGAACCGGGGCGAAA----CACGTTCAATCAGC    674
                     |.||||||||.|||.|||.||       ||||    ..|||.|..|||||
RBAM_031020__    629 GCCCGGTGAAAAAACAAAAAA-------GAAAGCTGATCGTACGCTCAGC    671

BSNT_05107___    675 TGCATAG-    681
                     ..||| | 
RBAM_031020__    672 CTCAT-GA    678


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