Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05143 and RBAM_031370

See Amino acid alignment / Visit BSNT_05143 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:38
# Commandline: needle
#    -asequence dna-align/BSNT_05143___yvbW.1.9828.seq
#    -bsequence dna-align/RBAM_031370___yvbW.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05143___yvbW-RBAM_031370___yvbW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05143___yvbW-RBAM_031370___yvbW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05143___yvbW
# 2: RBAM_031370___yvbW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1358
# Identity:     633/1358 (46.6%)
# Similarity:   633/1358 (46.6%)
# Gaps:         580/1358 (42.7%)
# Score: 2438.5
# 
#
#=======================================

BSNT_05143___      1 ATGAAAAACGACAATCAAACGTTAAAACGCACGATGACGTCCCGCCATAT     50
                     |||.||||.|||||.||||||||||||||.||||||.|||||.|.||.||
RBAM_031370__      1 ATGGAAAAGGACAAGCAAACGTTAAAACGGACGATGTCGTCCAGACACAT     50

BSNT_05143___     51 TATGATGATGGCGCTGGGCGGAGCAATCGGCGCAGGTTTATTTAAGGGGA    100
                     |||||||||||||||.||.||.||||||||.||.||..|.|||||.||.|
RBAM_031370__     51 TATGATGATGGCGCTTGGAGGCGCAATCGGGGCCGGGCTCTTTAAAGGCA    100

BSNT_05143___    101 GCAGCTCAGCGATCGATGTGGCAGGGCCATCTGTCATTATCGCATACCTG    150
                     |||||.|.|||||.||||..||.|||||.||.||..|..|.||.|||||.
RBAM_031370__    101 GCAGCACGGCGATTGATGAAGCGGGGCCGTCCGTGCTGCTGGCCTACCTC    150

BSNT_05143___    151 CTCGGCGGGATTATTTTGCTGTTTATTATGCAGGGACTGGCGGAAATGGC    200
                     ||||||||.||.|||.|||||||||||||||||||.|||||.||||||||
RBAM_031370__    151 CTCGGCGGAATCATTCTGCTGTTTATTATGCAGGGGCTGGCCGAAATGGC    200

BSNT_05143___    201 TGTTCGAAACCGTAAC--GCCAGAACCTTCCGTGATCTTGTCCAGCAG-G    247
                     |||..|||||  .|||  ||.||.||.|||||||||.|.||.|||||| .
RBAM_031370__    201 TGTCAGAAAC--AAACATGCAAGGACGTTCCGTGATTTGGTTCAGCAGTC    248

BSNT_05143___    248 TATTGGGAAAT--TACGCCGCTTACTTTTTGGACTGGATCTACTGGAAAA    295
                     |.|.|||   |  |||||.||.||||||||.|||||||||||.|||||||
RBAM_031370__    249 TCTCGGG---TCGTACGCTGCATACTTTTTAGACTGGATCTATTGGAAAA    295

BSNT_05143___    296 TGTGGGTGCTTAACATTGCGGCTGAAGCTGTTGTAGCTGCGATTTTCATT    345
                     ||||||||||.||.|||||.|||||.||.||.|||||.||.|||||||||
RBAM_031370__    296 TGTGGGTGCTCAATATTGCCGCTGAGGCGGTCGTAGCCGCCATTTTCATT    345

BSNT_05143___    346 CAATATTGGCTGCCGGGCTGCCCGATCTGGGTGTTGGCATTAGGA--ATT    393
                     ||||||||||||||||..||.|||||.|||.|.|||||.||  ||  |||
RBAM_031370__    346 CAATATTGGCTGCCGGAATGTCCGATATGGATATTGGCTTT--GATCATT    393

BSNT_05143___    394 TCTCTTATCGTCACGATTGTAAACTTGCTTTCTGTTAAAATCTTCGCCGA    443
                     ||..||.|.||.|||.|.||||||.||||||||||.|||.|.||.|||||
RBAM_031370__    394 TCCATTGTGGTGACGGTCGTAAACATGCTTTCTGTGAAACTGTTTGCCGA    443

BSNT_05143___    444 AACTGAATATTGGCTGGCAATGATCAAGATTACCGTTATTATTATCTTTA    493
                     .||.||.||.|||||.||..|.||.||.|||||.||.|||.|.|||||||
RBAM_031370__    444 GACGGAGTACTGGCTCGCGCTCATTAAAATTACAGTGATTGTCATCTTTA    493

BSNT_05143___    494 TTATTCT--GGGATTGCTGCTCTTATTTGTATCATTCGGTGATCATACAG    541
                     || ||.|  |||||| |||||.||||||.|.||||||||..||||.||.|
RBAM_031370__    494 TT-TTATGCGGGATT-CTGCTATTATTTTTCTCATTCGGCAATCACACGG    541

BSNT_05143___    542 CATCCGGATTTTCCAACCTGACAGACCACGGCGGATTTTTCCCGCACG--    589
                     |..|.||..|.||..|..|.||.||.|||||.||.|||||||||||.|  
RBAM_031370__    542 CGCCGGGGCTGTCTCATTTAACGGATCACGGAGGGTTTTTCCCGCATGGA    591

BSNT_05143___    590 GCGGCACAGGGCTG--ATCACGGCGATGCTTGTCGTCATCTACTCTTACG    637
                     ||||    |||.||  ||.|||||||||||.|||||.||||||||.||||
RBAM_031370__    592 GCGG----GGGGTGTCATTACGGCGATGCTCGTCGTGATCTACTCATACG    637

BSNT_05143___    638 GCGGTAC-AGAAATTATCGGTGTAACGCTTGCAGAGACAAAAAATCCGGA    686
                     ||||.|| .|||||.|||||.||.|||||.||.|||||||||||.||.||
RBAM_031370__    638 GCGGAACGGGAAATCATCGGCGTCACGCTGGCGGAGACAAAAAACCCCGA    687

BSNT_05143___    687 AAAGGTTGTCCCGAAAGCTGTCCGCAGCACACTGACACGGATTGTCGCGT    736
                     ||||||..||||||||||||||||.|||||..|.||.|||||||||||.|
RBAM_031370__    688 AAAGGTGATCCCGAAAGCTGTCCGAAGCACGTTAACGCGGATTGTCGCTT    737

BSNT_05143___    737 TTTACCTGCTGCCGTTTTTCATCATCGTCAGCCTGATTCCATGGAACCAA    786
                     |||||.||||||||||||||||||||||||||||||||||.|||||.|||
RBAM_031370__    738 TTTACTTGCTGCCGTTTTTCATCATCGTCAGCCTGATTCCTTGGAATCAA    787

BSNT_05143___    787 GTCAATTCGGTTCCGGAAAGTCCTTTCGTGATGGTCTTTAAAATGGTAGG    836
                     ||.||                                             
RBAM_031370__    788 GTTAA---------------------------------------------    792

BSNT_05143___    837 CATTCCGGGCGCGGACCATATCATGAATGCAGTCATCCTGCTGGCGATCA    886
                                                                       
RBAM_031370__    792 --------------------------------------------------    792

BSNT_05143___    887 TTTCTTCTATGAATTCAGGTTTATACGGATCATCACGCATTTTGTATACA    936
                                                                       
RBAM_031370__    792 --------------------------------------------------    792

BSNT_05143___    937 CAGGCAAGTGACGGAAGGCTTCCAAAGGTCTTCTCGAAGCTTTCATCGAA    986
                                                                       
RBAM_031370__    792 --------------------------------------------------    792

BSNT_05143___    987 AAACGTACCGATGTTTGCGATTCTGATGTGCACTTCTTCTCTCTATATTG   1036
                                                                       
RBAM_031370__    792 --------------------------------------------------    792

BSNT_05143___   1037 GCGTATTGATTTCTCTGTTCGCAGGAAGCCAAACATTTAATTATTTAATG   1086
                                                                       
RBAM_031370__    792 --------------------------------------------------    792

BSNT_05143___   1087 GGATCATTGGGATATACCGTTTTATTCATTTGGCTGATCATCGGATTCGC   1136
                                                                       
RBAM_031370__    792 --------------------------------------------------    792

BSNT_05143___   1137 TCATTTAAAATCGAGAAAACAGCAAACGGAAACACCGGCCTATTATGTAA   1186
                                                                       
RBAM_031370__    792 --------------------------------------------------    792

BSNT_05143___   1187 AATGGTTCCCGTACACGACATGGTTTGCGATTGTGGCATTACTCGCCATT   1236
                                                                       
RBAM_031370__    792 --------------------------------------------------    792

BSNT_05143___   1237 CTGATCGGAGTCATCATGACAACATCAATTGTCATTACCGGCATTACTGC   1286
                                                                       
RBAM_031370__    792 --------------------------------------------------    792

BSNT_05143___   1287 GGCGATCTACCTTTTGATTACAGTTGCATATTTGGTCAAAGGACGCAAGC   1336
                                                                       
RBAM_031370__    792 --------------------------------------------------    792

BSNT_05143___   1337 ATCAGTAA   1344
                             
RBAM_031370__    792 --------    792


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