Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05170 and RBAM_031510
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:39
# Commandline: needle
# -asequence dna-align/BSNT_05170___sigL.1.9828.seq
# -bsequence dna-align/RBAM_031510___sigL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05170___sigL-RBAM_031510___sigL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05170___sigL-RBAM_031510___sigL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05170___sigL
# 2: RBAM_031510___sigL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1377
# Identity: 985/1377 (71.5%)
# Similarity: 985/1377 (71.5%)
# Gaps: 126/1377 ( 9.2%)
# Score: 3380.0
#
#
#=======================================
BSNT_05170___ 1 ATGATGGATATGAAACTTCAGCAAGTACAAGTATTAAAGCCTCAACTGAC 50
|||||||||||.||||||||||||..||||.|.||||||||||||.|.||
RBAM_031510__ 1 ATGATGGATATCAAACTTCAGCAAACACAAATGTTAAAGCCTCAATTAAC 50
BSNT_05170___ 51 ACAGGAGCTCAGGCAGGCCATCACGCTGCTTGGCTATCATTCGGCAGAAC 100
.||.|||||.|..|||||.|||||..|.||.||.||..||||.||.||||
RBAM_031510__ 51 GCAAGAGCTTAAACAGGCTATCACATTACTCGGATACAATTCCGCGGAAC 100
BSNT_05170___ 101 TCGCCGAGTACATTGATGAGCTCTCACTGGAAAACCCTCTTATTGAACGA 150
|.||||..||.|||||||||||||||||||||||||||||.|||||||||
RBAM_031510__ 101 TGGCCGGATATATTGATGAGCTCTCACTGGAAAACCCTCTGATTGAACGA 150
BSNT_05170___ 151 AAGGAAACAGACACACCGCCACTATCTTACCATAAAACAAACAAAAACAG 200
||||||||||||||.||||||||||||||||||||||||||.||||||||
RBAM_031510__ 151 AAGGAAACAGACACGCCGCCACTATCTTACCATAAAACAAATAAAAACAG 200
BSNT_05170___ 201 GATGAATGCACAGGAAGCGG--GCCTTCAATTAAG--TAATCCGCAAAAA 246
||||||.|.||.||| ||| |||..||..|.|| |.|.|||| |||
RBAM_031510__ 201 GATGAAAGAACGGGA--CGGAAGCCAGCAGATCAGACTTACCCGC--AAA 246
BSNT_05170___ 247 ACATTGCAGGATGCGTTAAAACAGCAGTCACTCGATATGAATCTGACCAA 296
||..||||||||.||.|.|||||.||..|..|.||||||||.|||.||.|
RBAM_031510__ 247 ACGCTGCAGGATTCGCTCAAACAACAAGCCTTAGATATGAAACTGTCCGA 296
BSNT_05170___ 297 CACTGAAAAAAAGATTTTTAATTATCTGATTCATTCGCTTGATTCAAACG 346
...|||.|||||.|||||.|||||||||||.|||||..|.||.|||||||
RBAM_031510__ 297 TGATGAGAAAAAAATTTTCAATTATCTGATACATTCATTGGACTCAAACG 346
BSNT_05170___ 347 GGTACTTGGAAGAAGATGTGGAGGAGGCAGCACGGCGCCTATC-TGTATC 395
|.||.||..|||| |||.....|||| .|.||||.|.| ||||||
RBAM_031510__ 347 GATATTTAAAAGA------GGACATACCAGC-TGCCGCCGACCATGTATC 389
BSNT_05170___ 396 GGCT------AAGGAAACGGAGGCTGTTTTGGCAAAACTCCAGTCGTTAG 439
.||| .||||.|||||.||||||.||..|||.||.||.||..|.|
RBAM_031510__ 390 CGCTTCACAAGAGGAGACGGAAGCTGTTCTGAAAAAGCTTCAATCTCTTG 439
BSNT_05170___ 440 AACCGGCTGGAATCGGCGCGAGATCTTTGCAGGAATGCATCCTTCTTCAA 489
|.||.||.|||||||||||..|.||||||||||||||||||||||||||.
RBAM_031510__ 440 AGCCCGCGGGAATCGGCGCCCGGTCTTTGCAGGAATGCATCCTTCTTCAG 489
BSNT_05170___ 490 TTACAGCGGC-TGCCGAACAGAAATGAACAAGCGGAAATGCTGGTTT--- 535
.|.|..||.| |.||||.| |.||.|||||.|||||| |||.||
RBAM_031510__ 490 CTCCGCCGTCTTCCCGAGC-GGAACGAACAGGCGGAA----TGGATTGCC 534
BSNT_05170___ 536 --CAGCTCATTTTGATGCT-TTTGCACAAAAAAAATGGAAAGCGCTTTCA 582
| ||..||||||| ||| ||||||..|||.||.||||||||||||.||
RBAM_031510__ 535 GAC-GCCTATTTTGA-GCTATTTGCAAGAAAGAACTGGAAAGCGCTTACA 582
BSNT_05170___ 583 GTGGAGACAGGAATTCCGCTT-CATACTATTCAAGATAT--CTCAGATGA 629
.||.|.||.||.||||||||| .|.|| |||||.||.|| ||.|.||||
RBAM_031510__ 583 CTGAAAACGGGCATTCCGCTTAAAGAC-ATTCAGGACATCGCTGACATGA 631
BSNT_05170___ 630 T-ATCGCGGCTCTTCATCCTAGACCTGGCCTTCTGTT-TGCCCGGCCA-- 675
| |.|||| |||.||||.||.||.||.| ||.||| ||| .||
RBAM_031510__ 632 TCAGCGCG---CTTGATCCGAGGCCGGGGC-TCCGTTATGC----GCATG 673
BSNT_05170___ 676 --GAGCAAGATGTGTATATTGAGCCTGATATTTTTATCACCGTAAAAAAC 723
||||..|.|.|.||..|.||.||.|||||.||.|||||.||.||||||
RBAM_031510__ 674 AGGAGCCGGGTTTTTACGTGGAACCGGATATATTCATCACAGTGAAAAAC 723
BSNT_05170___ 724 GGGCA-CATTGCAGCGGAACTGAATACCCGCTCGTTTCCCGAGATCGATC 772
|||| ||||..||||...||.||.|.|||.||||||||.||.|||.|.|
RBAM_031510__ 724 -GGCATCATTCAAGCGCGGCTCAACAGCCGTTCGTTTCCTGATATCCAGC 772
BSNT_05170___ 773 TGCATCCGCAGTACAGAACGCTTTTATCATCCGGCTCCTGTCAGGATACT 822
|.|||.|.|| ||||||.|| |||.||||||| ||
RBAM_031510__ 773 TTCATACCCA-------------TTATCAGCC-GCTGCTGTCAG----CT 804
BSNT_05170___ 823 GTC----TCC--------------TATTTATCTGCGAAATATCAGGAGTG 854
|.| .|| |||.|.||.||.|||||||||||.||
RBAM_031510__ 805 GCCGGGTGCCGTGACACGAAAAATTATCTGTCGGCAAAATATCAGGAATG 854
BSNT_05170___ 855 GCGCTGGCTGAGCCGCGCGCTGCGGCAGCGAAAACAGACAATCACGAGAA 904
|||||||||||.|||.||..||..|||..|||||||.||.||||||||||
RBAM_031510__ 855 GCGCTGGCTGAACCGGGCTTTGTCGCAAAGAAAACAAACGATCACGAGAA 904
BSNT_05170___ 905 TTATC-----AATGAACTGATCACACGCCAAAAGGA----TTTCTTTCTG 945
||||| ..|| ||||| |||.| |||| ||| |||||.
RBAM_031510__ 905 TTATCGGCGTCCTG-ACTGA----ACGGC---AGGAATCCTTT-TTTCTC 945
BSNT_05170___ 946 AAAGGGCGAAGCGCAATGAAGCCGCTGACTCTCAGAGAGGTGGCGGA--- 992
|.|||...|||||.||||.||||||||||..|.||||||||||||||
RBAM_031510__ 946 ACAGGAAAAAGCGGAATGCAGCCGCTGACCTTAAGAGAGGTGGCGGAAAC 995
BSNT_05170___ 993 -CTGTCTAAGCCTTCATGAATCAACTGTGAGCCGGGCCATTAAAGGGAA- 1040
||| .|| ||.||.||||||||..|.|||||||||||.||||||||
RBAM_031510__ 996 GCTG---GAG-CTCCACGAATCAACGATCAGCCGGGCCATCAAAGGGAAG 1041
BSNT_05170___ 1041 AACAATACAAACGCCTTACGGGCTGTTTGAGATGAAACTCTTTTTCTCAG 1090
.|| .|.||.|||||.|||||.||||.|||.||||||...||||||||.|
RBAM_031510__ 1042 TAC-GTTCAGACGCCGTACGGACTGTATGAAATGAAAACATTTTTCTCGG 1090
BSNT_05170___ 1091 CAAAAGCCGAGGCTTCAGGTGATGGAGATGCGTCGAATTATGCAGTCAAA 1140
|.|||||.||..|.||.||.||.||.|..||.||.||||||||.||.|||
RBAM_031510__ 1091 CGAAAGCTGAATCGTCGGGGGACGGCGGCGCCTCCAATTATGCCGTAAAA 1140
BSNT_05170___ 1141 ACGCATCTGGAAAACCTGATCAATCAAGAGGACAAAACAAAACCGCTTTC 1190
.||||||||||.....||.||..|.||||.||.||||..|||||..||||
RBAM_031510__ 1141 GCGCATCTGGAGGCATTGGTCGGTAAAGAAGATAAAAAGAAACCTTTTTC 1190
BSNT_05170___ 1191 AGACCAAAAGCTTGTCGATTTGCTGTATGAACAACATGGCATCCAAATCT 1240
||||||||||||||.||||.|||||.||||||||.|||.|||||.|||||
RBAM_031510__ 1191 AGACCAAAAGCTTGCCGATCTGCTGGATGAACAATATGACATCCGAATCT 1240
BSNT_05170___ 1241 CGAGACGCACCGTGGCAAAATATCGCGACCAAATGAATATT---CCGTCA 1287
|.||.||||||||.||.|||||.||.||||||.|.|||||| ||||||
RBAM_031510__ 1241 CAAGGCGCACCGTCGCCAAATACCGTGACCAATTAAATATTCCGCCGTCA 1290
BSNT_05170___ 1288 TCGGCAGCGAGAAAGCGATATAAATAA 1314
||| ||||||||.||.||.|..|.|
RBAM_031510__ 1291 TCG---GCGAGAAAACGGTACAGCTGA 1314
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