Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05176 and RBAM_031550
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:39
# Commandline: needle
# -asequence dna-align/BSNT_05176___yvfD.1.9828.seq
# -bsequence dna-align/RBAM_031550___epsM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05176___yvfD-RBAM_031550___epsM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05176___yvfD-RBAM_031550___epsM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05176___yvfD
# 2: RBAM_031550___epsM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 713
# Identity: 452/713 (63.4%)
# Similarity: 452/713 (63.4%)
# Gaps: 127/713 (17.8%)
# Score: 1280.5
#
#
#=======================================
BSNT_05176___ 1 ATGAAAAACGTGGCCATTG----TGGGTGACGGCGGACACGGAAAGGTGA 46
.|||||||.||.| || |.||..||||||||||||||||.||..
RBAM_031550__ 1 GTGAAAAAGGTCG----TGCTGATCGGAAACGGCGGACACGGAAAAGTCG 46
BSNT_05176___ 47 TCA--GAGAGC-TG-ATAAACGCCCGCTCAGATA-CGCGCTTAGCCGCGG 91
|.| ||.|.| || || |||||.||.|||| .|.|||| ||||
RBAM_031550__ 47 TGAAGGAAATCGTGCAT----GCCCGTTCCGATATGGAGCTT----GCGG 88
BSNT_05176___ 92 TGC----TGGATGATAAATTCA-------AAACGTTCGAAGGCGGAAAAG 130
|| |||||||...||||| ...|||||| |
RBAM_031550__ 89 -GCGTATTGGATGACGGATTCAGCGGTTTTGCCGTTCG-----------G 126
BSNT_05176___ 131 AATGG----TACACAGGACCGCCGGAAGCCGTTAC--TGAACTGCGCAGG 174
||.|| ||.||.||.|.|.||.|||.|||..| || ||.||.|..
RBAM_031550__ 127 AACGGTTTATATACGGGCCGGACGAAAGACGTGCCCATG--CTTCGGAAA 174
BSNT_05176___ 175 CTCATTCCTGATGTGCTGT-TTC-TGAT-TGCTGTTGGGAAT-------A 214
|||.|.||.|| .||.|| ||| .||| ||| || |
RBAM_031550__ 175 CTCGTCCCCGA--GGCCGTATTCACGATATGC--------ATCGGCCGCA 214
BSNT_05176___ 215 ACAGTGTCAGAAAACAGCTGGC-GGAGCGACTGGGACTGAGGAAAGATGA 263
||.|.||||||||.|||||.|| |.|.||..||||..|| |||||||
RBAM_031550__ 215 ACGGCGTCAGAAAGCAGCTTGCTGAAACGCTTGGGCTTG----AAGATGA 260
BSNT_05176___ 264 TTTTATTA-----CATTGATTCACCCGTCAGCCATCGTCAGCAGGT---- 304
..|||| ||.|.||||||||....||.||||||| ||
RBAM_031550__ 261 --CGATTATGCCGCACTCATTCACCCCGGGGCGATCGTCA----GTGAAA 304
BSNT_05176___ 305 CGGCTGTCATTGGGGAAGGGACAGTGATTATGGCGGGCGCGATCATTCAG 354
|||||..|.|.||..|.||.||.||..|.|||||||||||..||||||||
RBAM_031550__ 305 CGGCTTCCGTCGGACACGGAACGGTTGTGATGGCGGGCGCCGTCATTCAG 354
BSNT_05176___ 355 GCGGATGCGC--GCATCGGCGCTCATTGCATCATCAATACGGGTGCAGTG 402
|||| |||| .|||||||||.||||||||||||||||||||.||.||.
RBAM_031550__ 355 GCGG--GCGCTGACATCGGCGCCCATTGCATCATCAATACGGGGGCGGTT 402
BSNT_05176___ 403 GCAGAGCACGATAATCAAATCAGCGATTACGTTCATCTGTCCCCGCGTGT 452
||.||.||.||.|||..||||.|.||||||||.|||||.||.|||||.|.
RBAM_031550__ 403 GCCGATCATGACAATGCAATCGGAGATTACGTCCATCTTTCACCGCGCGC 452
BSNT_05176___ 453 CACGCT----GTCAGGAG-------CGGTTTCCGTTCAGGAAGGCGCTCA 491
..|||| |.| |||| ||| ||||||..|.||
RBAM_031550__ 453 GGCGCTTGCCGGC-GGAGTGAAAGTCGG----------GGAAGGAACGCA 491
BSNT_05176___ 492 CGTCGGAACTGGTGCATCCGTCATACCGCAGA-TCACAATCGGGGCTTGG 540
|.||||||..||.||.|||||||||||||||| |.|| |||||..|||||
RBAM_031550__ 492 CATCGGAATCGGAGCGTCCGTCATACCGCAGATTGAC-ATCGGCCCTTGG 540
BSNT_05176___ 541 AGCATTGTCGGCGCCGGCTCCGCGGTGATCCGTCCCA--TACCGGACAGG 588
..|.||.|||||||.||..|.|||||.|||.| ||.| |.||||.|| .
RBAM_031550__ 541 TCCGTTATCGGCGCGGGGGCTGCGGTCATCAG-CCGAATTCCCGGCCA-T 588
BSNT_05176___ 589 GTAACGGCGGCCGGTGCTCCGGCACGCATCATTTCTTCCATTCAAACATC 638
||.|||||||.|||.|.||||||.|||.||||.||..|.||.||.| ||.
RBAM_031550__ 589 GTGACGGCGGTCGGCGTTCCGGCCCGCGTCATCTCCCCTATCCATA-ATG 637
BSNT_05176___ 639 AAACAAAGGATGA 651
|| |||||||||
RBAM_031550__ 638 AA--AAAGGATGA 648
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