Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05375 and RBAM_032490
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:50
# Commandline: needle
# -asequence dna-align/BSNT_05375___fliS.1.9828.seq
# -bsequence dna-align/RBAM_032490___fliS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05375___fliS-RBAM_032490___fliS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05375___fliS-RBAM_032490___fliS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05375___fliS
# 2: RBAM_032490___fliS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 443
# Identity: 261/443 (58.9%)
# Similarity: 261/443 (58.9%)
# Gaps: 82/443 (18.5%)
# Score: 702.5
#
#
#=======================================
BSNT_05375___ 1 ATGGCGATCCAAAATCCATATACAGCCTATCAGCAAAATTCAGTGAATAC 50
|||||.||..|.|||||.|.|.|.||.||||||||.|..||.||...|||
RBAM_032490__ 1 ATGGCAATAAATAATCCTTTTGCTGCTTATCAGCAGACATCCGTCTTTAC 50
BSNT_05375___ 51 GGCTACACCCGGGGAGCTGACGCTTATGCTGTATAATGGCTGTTTAAAAT 100
.||..|.||.|..||||||||.||||||||.|||||.|||||..|...||
RBAM_032490__ 51 AGCCGCTCCGGAAGAGCTGACCCTTATGCTTTATAACGGCTGCCTGCGAT 100
BSNT_05375___ 101 TTA-TAAGACTTGCCTCTCAGGCCATTGAGAATGATGATATGGAACGTAA 149
|.| |||| ||.|||...|||||.||..||.|..|..|..|.|||...||
RBAM_032490__ 101 TCATTAAG-CTGGCCAGGCAGGCGATGAAGCAAAACAACCTTGAAGCCAA 149
BSNT_05375___ 150 AAATGAGAATCTGATTAAAGCGCAAAATATTATTCAGGAATTAA--ATTT 197
||||||.|||.|..|.||.||||||||.||.|||||.||..|.| ||
RBAM_032490__ 150 AAATGAAAATATCGTAAAGGCGCAAAACATCATTCAAGAGCTCAGCAT-- 197
BSNT_05375___ 198 TACAC--TTAACCGTAACATAGAGCTTTCCG---------CTTCCATGGG 236
||| |.|||||..|.||.|||.|.||.| |.|||
RBAM_032490__ 198 --CACGTTAAACCGGGAGATTGAGATATCTGAACAGATGTCATCC----- 240
BSNT_05375___ 237 TGCGATGTACGATTATA------------TGTATCGAAGATTG-GTACAG 273
||.||.|||||.| || ||||| || |.||..
RBAM_032490__ 241 ----ATTTATGATTACATCCGCCGCCGGCTG-ATCGA----TGCGAACGT 281
BSNT_05375___ 274 GCA-AATATCAAAAATGATACGGGCATGCTGGCTGAG------GTTGAAG 316
||| |||| |||| .||| |.|||||
RBAM_032490__ 282 GCAGAATA-----------ACGG----------AGAGTTTTTAGATGAAG 310
BSNT_05375___ 317 -------GCTATGTAACAGATTTTCGCGATGCTTGGAAACAGGCCATTCA 359
||| .||.||.||.||||||||..|.|||||.||||||||.||
RBAM_032490__ 311 CGGAAAAGCT-CGTTACTGAATTTCGCGACACGTGGAAGCAGGCCATGCA 359
BSNT_05375___ 360 AAGTGAACGGAAGGACCGGCACGGATCAGGCGGGATCGCATGA 402
.|||||||||||..||.|.|||||..|.|||||..|.||.|||
RBAM_032490__ 360 GAGTGAACGGAAAAACAGCCACGGCGCGGGCGGCCTTGCCTGA 402
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