Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05429 and RBAM_032790

See Amino acid alignment / Visit BSNT_05429 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:54
# Commandline: needle
#    -asequence dna-align/BSNT_05429.1.9828.seq
#    -bsequence dna-align/RBAM_032790___lytA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05429-RBAM_032790___lytA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05429-RBAM_032790___lytA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05429
# 2: RBAM_032790___lytA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 424
# Identity:     198/424 (46.7%)
# Similarity:   198/424 (46.7%)
# Gaps:         173/424 (40.8%)
# Score: 453.0
# 
#
#=======================================

BSNT_05429         1 TTGGAATTTGTCGATAAAAAGGGAGAGGTGAAGAAGATG-AAAAAACT--     47
                                                         ||| ||||||||  
RBAM_032790__      1 ------------------------------------ATGAAAAAAACTAT     14

BSNT_05429        48 -----CATAGTTCTGACATTATCAATGCTGCTTT----TGTTGT-----C     83
                          |.|.||||        |.|||.|||||||    ||||||     |
RBAM_032790__     15 TGCAGCTTCGTTC--------TTAATACTGCTTTTTTCTGTTGTATTGGC     56

BSNT_05429        84 AGCTTGCGGCACTTCGGGCCAATCGGAGGACAAGTTAAGCTCAGGCAATA    133
                     |||.|||||.||..|||..|||||..||   |||..||||          
RBAM_032790__     57 AGCGTGCGGAACGGCGGATCAATCAAAG---AAGGGAAGC----------     93

BSNT_05429       134 AAAATGCAGCATCT--GAAGAAACCA---TCACTAAAGAA--GGTTCAT-    175
                             |..|||  |.|| |||||   ||| .||||||  ||  ||| 
RBAM_032790__     94 --------GGTTCTTCGGAG-AACCAGGCTCA-AAAAGAAACGG--CATA    131

BSNT_05429       176 -----TCGCGGGGT-TGGCTGACAGCCATACAATTGCGGTGAACATCGAT    219
                          ||    ||| ||||.||.|..||.|||||||..||.||..|.|||
RBAM_032790__    132 TTATGTC----GGTATGGCGGATACGCACACAATTGAAGTAAAAGTGGAT    177

BSNT_05429       220 GGCAAAGAAACAAC------GCTTCAAAT----TGATGA------AGATC    253
                     |       |.||.|      ||||..|||    ||||||      .|||.
RBAM_032790__    178 G-------ATCAGCCCGTCAGCTTTGAATTTTCTGATGACTTCTCTGATG    220

BSNT_05429       254 TTCAGGAAAAAGTCAATTCCATTGAAGAGGGCAAAAAAGTCGAAGTC--C    301
                     |||.|.|.|||.|||               ||.||||.|.|.|||||  |
RBAM_032790__    221 TTCTGAATAAATTCA---------------GCGAAAATGACAAAGTCAGC    255

BSNT_05429       302 AATA-----TACAAAAGTCGAGAATGGCGTCTTGGAGCTGAAAAG----C    342
                     |.||     |.||.||.| ||.||.|          ||..|||||    |
RBAM_032790__    256 ATTACGTATTTCACAAAT-GATAAAG----------GCCAAAAAGAGATC    294

BSNT_05429       343 ATCGAAATC---------AAATAA    357
                     |..||||||         ||||||
RBAM_032790__    295 AAGGAAATCGAGAAAGCAAAATAA    318


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