Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05437 and RBAM_032810

See Amino acid alignment / Visit BSNT_05437 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:54
# Commandline: needle
#    -asequence dna-align/BSNT_05437.1.9828.seq
#    -bsequence dna-align/RBAM_032810___mnaA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05437-RBAM_032810___mnaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05437-RBAM_032810___mnaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05437
# 2: RBAM_032810___mnaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1164
# Identity:     732/1164 (62.9%)
# Similarity:   732/1164 (62.9%)
# Gaps:         201/1164 (17.3%)
# Score: 2531.0
# 
#
#=======================================

BSNT_05437         1 ATGAAGAAACTAAAAGTCATGACAGTATTCGGCACGCGCCCTGAAGCCAT     50
                     .||||.|||||||||||.|||||.||||||||.||..|.||||||||.||
RBAM_032810__      1 TTGAAAAAACTAAAAGTAATGACCGTATTCGGTACAAGACCTGAAGCAAT     50

BSNT_05437        51 AAAAATGGCGCCGCTCGTA------CTTGAATTAAGAAAATATCCTCAAA     94
                     .||||||||.|||||||||      |||||      ||||||||...|||
RBAM_032810__     51 TAAAATGGCTCCGCTCGTATTAGAGCTTGA------AAAATATCAGGAAA     94

BSNT_05437        95 TTGAGTCTTATGTGACGGTTACAGCCCAACATAGGCAAATGCTTGACCAG    144
                     ||||.||....|||||.||.||.||.||.||.||.||.|||||.||.||.
RBAM_032810__     95 TTGATTCGCTGGTGACTGTAACCGCACAGCACAGACAGATGCTGGATCAA    144

BSNT_05437       145 GTACTTGAAGCTTTTGACTTAAAGCCTGATTTTGATTTGAATATCATGAA    194
                     ||.||||||||.||...|.|.|.|||||||||||||||||||||.|||||
RBAM_032810__    145 GTGCTTGAAGCATTCAGCATTACGCCTGATTTTGATTTGAATATTATGAA    194

BSNT_05437       195 AGAAAGGCAAACGCTGGCTGAAATTACGTCTAATGCGCTTATGAAGCTAG    244
                     |||..|.||||||||..|.||||||||.|||.||||..|..||||..|.|
RBAM_032810__    195 AGAGCGTCAAACGCTTTCAGAAATTACATCTCATGCTTTGCTGAAATTGG    244

BSNT_05437       245 ACGAGCTGTTTCAGTCCA-----TCAAACCGGACATTGTGCTTGTTCACG    289
                     ||.||||||     ||||     |.|||||.||.||.||..|.||.||||
RBAM_032810__    245 ACAAGCTGT-----TCCAAGAAGTAAAACCAGATATCGTTTTGGTCCACG    289

BSNT_05437       290 GCGATACGACAACGACATTTGCGGGTAGTCTTGCTGCTTATTATCACCAG    339
                     |.||||||||.||.||.||.||.||.||.|||||.||.|.|||.||.||.
RBAM_032810__    290 GGGATACGACGACAACGTTCGCCGGAAGCCTTGCCGCCTTTTACCATCAA    339

BSNT_05437       340 ATTTCCGTCGGCCATGTAGAGGCGGGACTTAGAACCGGGAACAAATACTC    389
                     ||..|..||||||||||.||.||.||.||..|.||....||.||||||||
RBAM_032810__    340 ATCGCTATCGGCCATGTGGAAGCCGGTCTGCGTACGCATAATAAATACTC    389

BSNT_05437       390 GCCGTTTCCTGAAGAGCTGAACAGGCTGCTGACGGGATCGATTGCCGATT    439
                     .||.||.||.||.||..|.||..|||.|.|||||||...|||.||.|||.
RBAM_032810__    390 TCCTTTCCCCGAGGAAATCAATCGGCAGATGACGGGCGTGATGGCTGATG    439

BSNT_05437       440 TTCATTTTGCGCCGACAGAG-CAGGCCGAAAAGAAT----TTACTCCACG    484
                     |..|||||||||||||| || ||||||||..|||||    ||.||    |
RBAM_032810__    440 TGAATTTTGCGCCGACA-AGCCAGGCCGAGCAGAATCTGCTTTCT----G    484

BSNT_05437       485 AAAATAAAGATCCGGAGACGATTTTCGTCACCGGAAATACCGCAATTGAT    534
                     ||||||||.|.|||||..|.||.||.|||||.||||||||.||.||.||.
RBAM_032810__    485 AAAATAAAAAGCCGGATTCTATATTTGTCACGGGAAATACGGCGATAGAC    534

BSNT_05437       535 GCACTTCGCACAACAGTAAGGGACGGCTATGCACATCCCGTCCTTGAAAA    584
                     ||.||||..||.|||||..||||.|..|||...|||||..|..||||.||
RBAM_032810__    535 GCGCTTCAAACGACAGTGCGGGAAGATTATTTTCATCCGATTTTTGACAA    584

BSNT_05437       585 AATCGGAAGTGA--CAAGATGATTTTACTTAC--CGCACATCGGCGTGAA    630
                     ..| ||||| ||  ||.|||||||.|..|.||  ||||||  |.||||||
RBAM_032810__    585 GCT-GGAAG-GAAGCAGGATGATTCTTTTAACAGCGCACA--GACGTGAA    630

BSNT_05437       631 AATTTAGGGAAGCCGATGGAAAACATGTTTAAAGCGATCAGGCGAATCGT    680
                     ||||||||.|.||||||||||.|.||||||||.||..||||..||.||||
RBAM_032810__    631 AATTTAGGCAGGCCGATGGAACAGATGTTTAAGGCCGTCAGAAGAGTCGT    680

BSNT_05437       681 CGAAGAATTTGACGGCGTACAGGTCGTTTATCCCGTTCATCTCAATCCCG    730
                     .|||||.|||||.|.||||||.||||||||||||||||||.|.|||||||
RBAM_032810__    681 TGAAGAGTTTGAGGACGTACAAGTCGTTTATCCCGTTCATTTGAATCCCG    730

BSNT_05437       731 CTGTTCGTGAAGCGGCTGCA-AAG--CACTTCGGTGATTTGGATAAAGTC    777
                     |.||||||||   |||.||| |||  ||.||.|.|||||.|||.|..||.
RBAM_032810__    731 CAGTTCGTGA---GGCCGCAGAAGCCCATTTTGCTGATTCGGACAGGGTG    777

BSNT_05437       778 CATCTGTTAGAGCCGCTCGAAGTCATCGATTT-TACAACTTCGCTGCTGA    826
                     ||..|..||||.||.||.||.|||.|.||||| .|.|||||||||||..|
RBAM_032810__    778 CACTTAATAGAACCTCTGGAGGTCGTGGATTTCCATAACTTCGCTGCGAA    827

BSNT_05437       827 AGCTCACTTCATCCTCACCGACTCGGGTGGGGTGCAGGAAGAAGCGCCGT    876
                     |||..|||||||..|.||||||||.||.|||||.|||||.||||||||.|
RBAM_032810__    828 AGCAAACTTCATTTTGACCGACTCAGGCGGGGTTCAGGAGGAAGCGCCTT    877

BSNT_05437       877 CGCTTGGAAAGCCGGTCCTCGTGCTTCGCGATACTACGGAACGGCCAGAA    926
                     |.||.||||||||||||.|.||||||.|.||.||.||.||.||.||.|||
RBAM_032810__    878 CTCTCGGAAAGCCGGTCTTGGTGCTTAGGGACACAACCGAGCGCCCCGAA    927

BSNT_05437       927 GGCGTTCGGGCCGGTACGCTTAAA-CTGGCAGGAACGGATGAAGATAAGA    975
                     ||.||....|||||.|| .||||| |||||.||.||.||||||||.|.|.
RBAM_032810__    928 GGAGTGAAAGCCGGGAC-ATTAAAGCTGGCGGGTACAGATGAAGAAACGG    976

BSNT_05437       976 TCTATCAACTGA--------------------------------------    987
                     |.|||||.||||                                      
RBAM_032810__    977 TGTATCAGCTGACAAAACAGCTCTTAACCGATCAGGCTGAATATGAACGG   1026

BSNT_05437       987 --------------------------------------------------    987
                                                                       
RBAM_032810__   1027 ATGTCAAAGGCGTCAAACCCTTATGGTGACGGATCGGCTTCAAAACGGAT   1076

BSNT_05437       987 --------------------------------------------------    987
                                                                       
RBAM_032810__   1077 TGTGGAAGAACTGCTTTATCGGTACGGCTATAGAAAAACCCGTCCGCAGC   1126

BSNT_05437       987 --------------    987
                                   
RBAM_032810__   1127 CTTTTACAGAATAA   1140


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