Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05440 and RBAM_032820
See
Amino acid alignment /
Visit
BSNT_05440 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:54
# Commandline: needle
# -asequence dna-align/BSNT_05440___gtaB.1.9828.seq
# -bsequence dna-align/RBAM_032820___gtaB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05440___gtaB-RBAM_032820___gtaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05440___gtaB-RBAM_032820___gtaB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05440___gtaB
# 2: RBAM_032820___gtaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 895
# Identity: 687/895 (76.8%)
# Similarity: 687/895 (76.8%)
# Gaps: 26/895 ( 2.9%)
# Score: 2659.0
#
#
#=======================================
BSNT_05440___ 1 TTGAAGAAAGTTCGTAAAGCGATAATTCCCGCAGCGGGCCTTGGGACACG 50
.||||||||||.||.|||||.||.|||||.|||||.||..|.||.||.||
RBAM_032820__ 1 GTGAAGAAAGTACGCAAAGCCATTATTCCGGCAGCAGGTTTAGGCACTCG 50
BSNT_05440___ 51 TTTCCTCCCTGCAACGAAAGCGATGCCTAAAGAAATGCTTCCAATCGTAG 100
|||..|.||.||.||.|||||.||||||||||||||||||||||||||.|
RBAM_032820__ 51 TTTTTTGCCGGCCACAAAAGCAATGCCTAAAGAAATGCTTCCAATCGTTG 100
BSNT_05440___ 101 ATAAGCCAACTATTCAATATATTATTGAAGAAGCCGTTGAAGCCGGCATT 150
|||||||.||.|||||.||||||||.||||||||.||.|||.|||||||.
RBAM_032820__ 101 ATAAGCCGACAATTCAGTATATTATCGAAGAAGCTGTCGAATCCGGCATC 150
BSNT_05440___ 151 GAAGATATTATCATCGTAACAGGTAAAAGCAAACGAGCGATTGAAGACCA 200
|||||||||||.||||||||.||.|||.|.|||.||||.||.||||||||
RBAM_032820__ 151 GAAGATATTATTATCGTAACCGGAAAAGGAAAAAGAGCAATAGAAGACCA 200
BSNT_05440___ 201 TTTCGATTTCTCGCCGGAACTCGAAAGAAACCTTGAGGAAAAGGGTAAAA 250
||||||.....|.||.|||||.|||.|.||..|.||.|||||.||.||||
RBAM_032820__ 201 TTTCGACAATGCCCCTGAACTGGAACGTAATTTAGAAGAAAAAGGGAAAA 250
BSNT_05440___ 251 CCGAACTGCTTGAAAAAGTAAAAAAAGCGTCAAACCTCGCTGATATTCAC 300
.||||||||||.|||||||.||||||.|||||||..|.||.|||||.|||
RBAM_032820__ 251 TCGAACTGCTTCAAAAAGTGAAAAAATCGTCAAATATTGCGGATATCCAC 300
BSNT_05440___ 301 TATATTCGCCAAAAAGAACCAAAAGGACTTGGGCATGCCGTTTGGTGCGC 350
|||||||||||||||||.|||||||||||.||.|||||||||||||||||
RBAM_032820__ 301 TATATTCGCCAAAAAGAGCCAAAAGGACTCGGTCATGCCGTTTGGTGCGC 350
BSNT_05440___ 351 ACGCAACTTTATTGGAGACGAGCCATTCGCAGTTCTCCTTGGAGACGACA 400
|||||||||.||.||.||.||.||.|||||.|||||.||.||.||.||.|
RBAM_032820__ 351 ACGCAACTTCATCGGCGATGAACCTTTCGCCGTTCTTCTCGGCGATGATA 400
BSNT_05440___ 401 TTGTCCAAGGAGAAAAACCTGGTCTTCGCCAGCTGATGGACGAGTACGAA 450
|||||||.|..||||||||.||.|||||.|||||||||||.||.||||||
RBAM_032820__ 401 TTGTCCAGGCTGAAAAACCGGGACTTCGTCAGCTGATGGATGAATACGAA 450
BSNT_05440___ 451 AAGACTCTCTCTTCCGTTATTGGCGTTCAGCAAGTACCTGAAGACCAAAC 500
||.||..|.|||||..|.||.||.|||||||||||.||||||..|.|.||
RBAM_032820__ 451 AAAACATTGTCTTCAATCATCGGTGTTCAGCAAGTTCCTGAAAGCGACAC 500
BSNT_05440___ 501 GCATCGCTACGGAATCATTGATCCTCTGACAAACGAAGGGCGCCTATATC 550
.||.|||||||||||.||.|||||..|.|||||.|||||.||||..||.|
RBAM_032820__ 501 ACACCGCTACGGAATTATCGATCCGTTAACAAATGAAGGCCGCCGTTACC 550
BSNT_05440___ 551 AGGTCAAAAACTTTGTAGAAAAACCAAAACCGGGCACGGCACCGTCTAAC 600
||||||||||.||||||||.||.||..||||||||||.||.||.||.|||
RBAM_032820__ 551 AGGTCAAAAATTTTGTAGAGAAGCCTGAACCGGGCACAGCTCCTTCCAAC 600
BSNT_05440___ 601 CTTGCGATTTTGGGACGGTATGTCTTTACTCCTGAAATTTTCATGTACTT 650
.|.||.|||||.|||.|.||.||.||.|||||||||||||||||||||.|
RBAM_032820__ 601 TTGGCTATTTTAGGAAGATACGTTTTCACTCCTGAAATTTTCATGTACCT 650
BSNT_05440___ 651 AGATAAACAGCAAATCGGTGCAGGGGGAGAGATCCAGCTGACCGATGCTA 700
.||..|.|||.||.||||||||||.|||||.||.||..|.||.||.||.|
RBAM_032820__ 651 GGAACAGCAGGAAGTCGGTGCAGGAGGAGAAATTCAATTAACGGACGCCA 700
BSNT_05440___ 701 TTCAGCAGTTAAACGAAATCCAGCGCGTATTTGCTTATGACTTTGAAGGC 750
|.||..||.|.||.||.||.|||||.||.||.||||||||.||.|||||.
RBAM_032820__ 701 TCCAAAAGCTCAATGACATTCAGCGTGTCTTCGCTTATGATTTCGAAGGA 750
BSNT_05440___ 751 AAACGCTATGATGTTGGAGAAAAACTCGGTTTTATCCAGACAACTCTCGA 800
|||||.||.|||||.||.|||||||||||.||||||.||||.||.||.||
RBAM_032820__ 751 AAACGTTACGATGTCGGTGAAAAACTCGGATTTATCGAGACGACGCTTGA 800
BSNT_05440___ 801 ATTTGCCATGCAGGA-CAGCGAACTGAAGGAT-TC--------ACTGATT 840
|||||||.|.||||| | ||||| || |.|.|||
RBAM_032820__ 801 ATTTGCCTTACAGGATC----------AGGATATCCGCCATAAATTAATT 840
BSNT_05440___ 841 CCATTTATGCAGGACCTTCTGTCAAAAGAAGAATTTTAA------ 879
||.||.|||.||||.|||||...||||||||||..|.|.
RBAM_032820__ 841 CCGTTCATGAAGGATCTTCTTGAAAAAGAAGAAGCTGACGAATAG 885
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.