Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05452 and RBAM_032850

See Amino acid alignment / Visit BSNT_05452 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:55
# Commandline: needle
#    -asequence dna-align/BSNT_05452___tagF.1.9828.seq
#    -bsequence dna-align/RBAM_032850___tagF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05452___tagF-RBAM_032850___tagF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05452___tagF-RBAM_032850___tagF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05452___tagF
# 2: RBAM_032850___tagF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2346
# Identity:    1476/2346 (62.9%)
# Similarity:  1476/2346 (62.9%)
# Gaps:         381/2346 (16.2%)
# Score: 4198.0
# 
#
#=======================================

BSNT_05452___      1 ATGGATAGTGCAATTCC-----GATAAAATTT----CAGCTGCTGGAAAT     41
                     ||||.||..|.||.|||     ||||.||.||    ||.||     .||.
RBAM_032850__      1 ATGGGTATAGAAAATCCTGTCAGATACAAGTTAAAACATCT-----TAAC     45

BSNT_05452___     42 AAAAATTAATGATACTGGCCTCTATTTTGTGTT-CGAAAGTTCTGTCTCT     90
                     |.|||..|| ||.||        |||..|..|| |||.| |.|||     
RBAM_032850__     46 ATAAAGGAA-GAGAC--------ATTCAGCATTACGATA-TCCTG-----     80

BSNT_05452___     91 CTTGATCATGTCGATG----------------TTTTGGCAG----TTAAC    120
                       |||..|||||..||                |.||  |||    |.||.
RBAM_032850__     81 --TGAAAATGTCACTGCAGGGGAAGAGCCTTCTCTT--CAGATTATAAAT    126

BSNT_05452___    121 CGCAATACGAAAAAAG----ACATGCGTGTACC-ATGTAAC---------    156
                     ||   ||.||.|||||    ||.|.| .||.|| .||.|||         
RBAM_032850__    127 CG---TAAGACAAAAGCGGAACTTTC-CGTCCCTCTGAAACGGTTGGCCG    172

BSNT_05452___    157 -AAAATAAGCG----ATTCAAAGCAGTTAAAAGCAGCGAAAGTATCTTTA    201
                      |.|  |.|||    .|.|.|.||.||||..|||| ||            
RBAM_032850__    173 GAGA--AGGCGGGGAGTACCATGCTGTTATGAGCA-CG------------    207

BSNT_05452___    202 GATGACCTATCTAACCTGATGATA--GACG---AAGCG--GTCATTGATT    244
                     |||...||.|||.|||     |||  ||||   ||| |  ||| |.||||
RBAM_032850__    208 GATCTGCTTTCTGACC-----ATACGGACGGCAAAG-GATGTC-TGGATT    250

BSNT_05452___    245 TTTATG--TACTATATAAAAATAATAAAA--AATATCAATGTAAAAAGAG    290
                     |.||||  |.||.|||  .|||.||.|.|  .||||||  |||||||..|
RBAM_032850__    251 TCTATGTCTCCTTTAT--CAATGATGACAGTGATATCA--GTAAAAAACG    296

BSNT_05452___    291 GATTTACA---CAGCATCAAAACCGATTGAGCTGTCTTGGCATAAGGATC    337
                     |  |||.|   ||||.| ..||||.|||||.|||||||...||||.|||.
RBAM_032850__    297 G--TTAAAATCCAGCCT-TGAACCTATTGAACTGTCTTCTTATAAAGATG    343

BSNT_05452___    338 AAGCCAATCA---GTTCATTTATTTACCGTATAAGACCCTAAAAGGCCAC    384
                     |.||..||||   ||||   |.|||.||.||.|.|||....|||||..|.
RBAM_032850__    344 AGGCTCATCATATGTTC---TTTTTCCCTTACACGACGAAGAAAGGGAAT    390

BSNT_05452___    385 TTCGCTCTTGATGTTTTACGAAGTAAAGCAGTGGCTGAA-----------    423
                     ||  |||.|              ||||||.|..||.|||           
RBAM_032850__    391 TT--CTCCT--------------TAAAGCTGCTGCAGAAAAAGTTCGTCA    424

BSNT_05452___    424 -CCGGACAGCATGAAGTTATGC-----TCCGACGGAAAATTAATGATCGG    467
                      .||||..| |||||.|...||     ||.|||||.|..|||  .|||.|
RBAM_032850__    425 CGCGGATTG-ATGAAATGGAGCTCGAATCTGACGGCAGCTTA--CATCTG    471

BSNT_05452___    468 --AGGCTATACTTTTCTGCTAGATGCTGAAG-AACGTTCATTAG-TAAAA    513
                       |||.|.|.|.||.|.|||..||||.|.|| |||.||.|  || |||||
RBAM_032850__    472 AAAGGTTTTGCATTCCGGCTGAATGCGGCAGAAACCTTAA--AGATAAAA    519

BSNT_05452___    514 AGCAGAAAGCTGGTTTT--AAAGGAAATTAGCCAAAACGATAAGGAGAGG    561
                     ...|.|||.|||.||.|  |||.|||       ||||.||.|||.|||||
RBAM_032850__    520 GAAAAAAACCTGATTCTGAAAATGAA-------AAAAGGAAAAGAAGAGG    562

BSNT_05452___    562 -------TTTTTTGA--TTTCC-CTTTAAAAGACGTTCAGCGCGGCGATC    601
                            ..||.|||  |.||| |||  .|.|||||.|.|.|...|||.|
RBAM_032850__    563 AGCCTCTCATTCTGAAGTATCCGCTT--CACGACGTGCCGAGACACGACC    610

BSNT_05452___    602 TATCAGCTGAT-----TCTTCAGATCATACCG-------------TAGGG    633
                     |      ||||     |.|||||..||.|.||             ||||.
RBAM_032850__    611 T------TGATGAATATGTTCAGGACACAACGATGCTTGACACGATAGGC    654

BSNT_05452___    634 TTTGAGGTGGAAATTGATCTGAAAAAGC--TATATGAAGA----AAACAG    677
                     |||||.....||||||||.||  ||.||  |.|||.||||    ||.|||
RBAM_032850__    655 TTTGATACAAAAATTGATTTG--AATGCCGTTTATAAAGAATTGAATCAG    702

BSNT_05452___    678 GATGCCTGCT-TTCTTTCAGTTTTATATAGAATACGTAGGTGAAGATGCT    726
                          |.||| ..||||||.||..||||..|||.|.|...|||||||||.
RBAM_032850__    703 -----CAGCTAACCTTTCAATTCCATATTCAATTCATTTTTGAAGATGCC    747

BSNT_05452___    727 GCAACAGGGGAGGAAATCATTATAAAAAGCAGGACATTCAGG---CTGAT    773
                     |..||.||.||.||.||.||.|..||.||||...|.||.|.|   |||| 
RBAM_032850__    748 GGGACGGGTGAAGAGATTATCACCAACAGCAAACCGTTAAAGGTTCTGA-    796

BSNT_05452___    774 TGATGATATAGAC-AGT------TTTTCAATTGTTGACAC-------AAA    809
                         .||.|..|| |||      |...|||||     |||       |||
RBAM_032850__    797 ----AATCTGAACAAGTAAACCCTAACCAATT-----CACGATCCTGAAA    837

BSNT_05452___    810 A-----AAAGGACCGGCTCGTTTTCACATTTATC-CGCAGAAGCGAAAAC    853
                     |     |||||.||.||..|.||||||.||| || ||.|.||  ||||||
RBAM_032850__    838 ACGGAGAAAGGGCCTGCCAGATTTCACGTTT-TCACGAAAAA--GAAAAC    884

BSNT_05452___    854 GGAGCATGT--GTCTAAGAATGAATGATTACACGATCAGAACCCGTGCGG    901
                     |.|..||.|  ..||.||||||||.|||||||...||||.|||||.|.||
RBAM_032850__    885 GAAAAATCTCCACCTGAGAATGAACGATTACAGCTTCAGCACCCGCGTGG    934

BSNT_05452___    902 TTTATTTTGCCAAAGGAAAAGGTAAAA---GGCTGATGTCAGTCATCCGT    948
                     ..|||||||..|.||| ||||.|.|||   ||| |.|     ||.|..||
RBAM_032850__    935 AGTATTTTGTGAGAGG-AAAGCTGAAACGGGGC-GCT-----TCCTTTGT    977

BSNT_05452___    949 A---AAG-GCAAGAATAAAGTAAAGAAAAAGATTTCGGGCATGGTGAAGA    994
                     |   ||| |.||||||||..|   |||||||.|      |||.|.|||.|
RBAM_032850__    978 ACGCAAGAGAAAGAATAAGCT---GAAAAAGTT------CATTGAGAAAA   1018

BSNT_05452___    995 GGGCATACTATTTTACTTTTGAA------------CTGGCCGGCAAACTG   1032
                       |.|||| |....||||.|.||            .|.||.||.||||||
RBAM_032850__   1019 --GAATAC-AAAACACTTATAAAGCGGGATTCAGGGTTGCGGGGAAACTG   1065

BSNT_05452___   1033 CCTGTTAAAAAGAAAACCGTCATTTTTGAAAGCTTTGCCGGTAAGCAGTA   1082
                     |||||.|||.|||||...|||||.|||||||||||||||||.||.|||||
RBAM_032850__   1066 CCTGTCAAACAGAAATTTGTCATGTTTGAAAGCTTTGCCGGAAAACAGTA   1115

BSNT_05452___   1083 CAGCTGCAATCCAAGAGCAATTTATGAATATATG----AAGGAACATCAC   1128
                     ||||||||||||..|.||.|||||||||||.|||    |||  |.||  .
RBAM_032850__   1116 CAGCTGCAATCCGCGGGCGATTTATGAATACATGAGCAAAG--AGAT--G   1161

BSNT_05452___   1129 CCGGAATACAACTTAATATGGAGTGTAAATCCGAGTTA--TACAGAAATT   1176
                     |||||||||....|....|||||||||||.||...|||  .|||||.|||
RBAM_032850__   1162 CCGGAATACCGTCTCTGCTGGAGTGTAAACCCCGCTTACTCACAGACATT   1211

BSNT_05452___   1177 TTCGAAGAAAAA--AATGTCCCTTATATTAACCGATTCACGCTGAAGTGG   1224
                     |  .||||.|||  ||  |.||||||||..|.||.||.|.|.|.||.|||
RBAM_032850__   1212 T--AAAGATAAAGGAA--TTCCTTATATCGAACGCTTTAAGTTCAAATGG   1257

BSNT_05452___   1225 CTGTTCGCCATGGCAAGGGCGGAATTTTGGGTTGTAAACAGCCGGCTCCC   1274
                     |||||.|||||||||||.||.||.|..||||||||.||||||||..|.||
RBAM_032850__   1258 CTGTTTGCCATGGCAAGAGCCGAGTACTGGGTTGTCAACAGCCGTATGCC   1307

BSNT_05452___   1275 TTTATGGATACCCAAACCAAAGCACACGACATATGTGCAGACGTGGCACG   1324
                     ..|.|||||.||.|||||..||||.|||||||||||.|||||.|||||.|
RBAM_032850__   1308 GCTGTGGATTCCGAAACCTGAGCATACGACATATGTCCAGACATGGCATG   1357

BSNT_05452___   1325 GGACTCCGCTGAAAAGGCTTGCCGTCGATATGGAAGAAGTGCACATGCCG   1374
                     |.||.||..|.||..|.||||||||.||||||||.||||||||.|||||.
RBAM_032850__   1358 GCACGCCTTTAAAGCGCCTTGCCGTAGATATGGATGAAGTGCATATGCCC   1407

BSNT_05452___   1375 GGCACCAACACTGAGAAGTACAAGCAAAATTTCACTAAAGAAGCATCTAA   1424
                     ||.||.||||||||.||.|||||||..||.||.||.|.|||.||.||.||
RBAM_032850__   1408 GGAACAAACACTGAAAAATACAAGCGCAACTTTACGACAGAGGCTTCAAA   1457

BSNT_05452___   1425 GTGGGACTATTTAATATCCCCGAATCG-GTATTCAACCGAGATTTTTGCC   1473
                     ||||||.||..|.||.||.||||| || .|||||||||||.||.||.|||
RBAM_032850__   1458 GTGGGATTACCTGATTTCACCGAA-CGCATATTCAACCGAAATATTCGCC   1506

BSNT_05452___   1474 CGCGCTTTTCAATTTAACAAAACAATGATTGAGTCCGGATACCCGAGGAA   1523
                     ||.||.|||||.|||||.|||||.||||||||.||.|||||.|||.||||
RBAM_032850__   1507 CGGGCGTTTCAGTTTAATAAAACCATGATTGAATCGGGATATCCGCGGAA   1556

BSNT_05452___   1524 TGATTTTCTGTATACAGACAACCGCC---CGG------AAACGATGAAGG   1564
                     |||.||.||..|.||.||.|||.|||   |.|      ||.||.||||.|
RBAM_032850__   1557 TGACTTCCTTCAAACGGATAACAGCCTTTCTGTCATTAAAGCGCTGAAAG   1606

BSNT_05452___   1565 CCATAAAGAAAAAAATGAATATCCCCGAAGATAAAAAGGTCATTTTATAT   1614
                              |||||||||||.|.||..||||||||||.||.|||.|.||.
RBAM_032850__   1607 ---------AAAAAATGAATCTTCCGCAAGATAAAAAAGTGATTATCTAC   1647

BSNT_05452___   1615 GCACCGACATGGCGGGACGATCAGTTCTATAAAAAAGGAAAATACAAATT   1664
                     |||||||||||||||||.||.||.||.|||||.||.|||||||||||.||
RBAM_032850__   1648 GCACCGACATGGCGGGATGACCAATTTTATAAGAAGGGAAAATACAAGTT   1697

BSNT_05452___   1665 TGACCTTGATTT-GA-----AT--ATGGAAAAGCTGCGAGAGGAGATCGG   1706
                     |||||||||||| ||     ||  ||        ||.||||.|.||||||
RBAM_032850__   1698 TGACCTTGATTTAGACCTTCATCAAT--------TGAGAGAAGCGATCGG   1739

BSNT_05452___   1707 CGATAATTACGTCATCATTTTAAGAATGCACTATTTAGTCGCGGAAAACT   1756
                     ||||..|||.|||||.||||||.|||||||.|||.|.||.||||||||||
RBAM_032850__   1740 CGATCGTTATGTCATTATTTTACGAATGCATTATCTCGTGGCGGAAAACT   1789

BSNT_05452___   1757 TTGACCTTTCACCCTACAAAGGATTCGCATATGATTTCT-CAGCATATGA   1805
                     ||||.||...|||.||..|||||||.||.|||||||||| |||| ||.||
RBAM_032850__   1790 TTGATCTCGGACCGTATGAAGGATTTGCTTATGATTTCTCCAGC-TACGA   1838

BSNT_05452___   1806 AGATATTCGCGAACTTTATATGGTATCTGATTTGTTAATTACAGATTACT   1855
                     ||||||.||.||.||.||||||||.||||||||..|.||.||.||.||.|
RBAM_032850__   1839 AGATATCCGTGAGCTGTATATGGTCTCTGATTTACTCATAACGGACTATT   1888

BSNT_05452___   1856 CTTCAGTATTCTTTGATTTCGCAAATTTGAAACGTCCAATGATTTTCTTC   1905
                     |.||.||.||.|||||.|..||||||.|||||.|.||.|||.|.||.|..
RBAM_032850__   1889 CCTCTGTCTTTTTTGACTATGCAAATCTGAAAAGACCGATGCTGTTTTAT   1938

BSNT_05452___   1906 GTTCCAGACATTGAAACCTATCGTGACAAGCTGCGCGGCTTTTATTTTGA   1955
                     ||.||.||.||.|||||.||.||.||.||.||..|.||.|||||.|||||
RBAM_032850__   1939 GTGCCTGATATCGAAACGTACCGGGATAAACTCAGAGGGTTTTACTTTGA   1988

BSNT_05452___   1956 CTTTGAACGAGAAGCACCAGGTCCGTTAGTCAAAACGACTGAGG-GA-GT   2003
                     |||||||..||||||.||.||.|||.|.||||||  ||...||| || ||
RBAM_032850__   1989 CTTTGAAAAAGAAGCGCCCGGCCCGCTTGTCAAA--GAAACAGGTGACGT   2036

BSNT_05452___   2004 AATTGAGAAAA----TCAAGGAAACAGAGACATCTGACTATCGCCTGCCA   2049
                     .||    .|||    ||||.|||||.||..||..|||.|||...||.||.
RBAM_032850__   2037 TAT----CAAATGGGTCAATGAAACGGAATCAGATGATTATAAGCTTCCG   2082

BSNT_05452___   2050 GACATT--TTTGAACCTTTTTATGAAAGGTTTTGTTACCTGGAGACAGGT   2097
                     |  |||  ||.|..||||||||.||.|.|||.|||||..|.||.||.||.
RBAM_032850__   2083 G--ATTCATTCGGGCCTTTTTACGAGAAGTTCTGTTATTTAGAAACCGGA   2130

BSNT_05452___   2098 AACTCTTCGGAAAAAGTAGTGAATAG-AATTTTTG------AGTAA   2136
                     .|.||.||.|||||||..|| ||.|| .|||||.|      |||||
RBAM_032850__   2131 GAATCGTCTGAAAAAGCCGT-AAAAGTGATTTTCGGGGACAAGTAA   2175


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.