Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05481 and RBAM_033130
See
Amino acid alignment /
Visit
BSNT_05481 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:58
# Commandline: needle
# -asequence dna-align/BSNT_05481___rbsB.1.9828.seq
# -bsequence dna-align/RBAM_033130___rbsB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05481___rbsB-RBAM_033130___rbsB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05481___rbsB-RBAM_033130___rbsB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05481___rbsB
# 2: RBAM_033130___rbsB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 936
# Identity: 707/936 (75.5%)
# Similarity: 707/936 (75.5%)
# Gaps: 36/936 ( 3.8%)
# Score: 2631.0
#
#
#=======================================
BSNT_05481___ 1 ATGAA-AAAGGCAGTATC-------CGTCATTTTAACGTTATCATTATTT 42
||||| ||||.||..||| ||.|| ||||||.|.|||
RBAM_033130__ 1 ATGAAGAAAGCCATCATCACGATCGCGGCA--------TTATCACTGTTT 42
BSNT_05481___ 43 TTGTTAACCGCCTGTTCGCTTGAGCCTCCCCAATGGGCAAAGCCTTCAAA 92
|||.|..||||||||||.|||||.||.||.|||||||||||.||.|||||
RBAM_033130__ 43 TTGCTGTCCGCCTGTTCACTTGAACCGCCACAATGGGCAAAACCGTCAAA 92
BSNT_05481___ 93 CTCGGGGAAC--AAAAAGGATTTCACCATCGGCTTGTCCGTCTCAACGCT 140
|.| ..||| |||||.||.|||||.|||||..|.||||||||.||..|
RBAM_033130__ 93 CAC--AAAACATAAAAAAGAATTCACTATCGGGCTCTCCGTCTCCACATT 140
BSNT_05481___ 141 TAATAATCCTTTTTTTGTCTCATTAAAAAAGGGTATCGAAAAAGAAGCTG 190
.||.|||||.||.||.||.|||||||||.|.||..|.|.|||.|||||..
RBAM_033130__ 141 GAACAATCCGTTCTTCGTTTCATTAAAAGAAGGCGTTGTAAAGGAAGCCA 190
BSNT_05481___ 191 AAAAACGGGGAATGAAAGTGATCATTGTTGATGCACAAAATGATTCATCG 240
||||||||||.|||||.||.||.|||||.|||||.||||||||||||||.
RBAM_033130__ 191 AAAAACGGGGCATGAAGGTCATTATTGTCGATGCTCAAAATGATTCATCT 240
BSNT_05481___ 241 AAACAGACGAGTGACGTGGAAGATTTAATTCAGCAAGGTGTTGATGCATT 290
||||||.|.|.||||||.||||||||.||.|||||.||.||.|||||..|
RBAM_033130__ 241 AAACAGTCAAATGACGTAGAAGATTTGATCCAGCAGGGAGTCGATGCGCT 290
BSNT_05481___ 291 ATTAATCAACCCGACTGATTCTTCGGCGATCTCAACGGCAGTAGAATCTG 340
..|.|||||||||||.|||||.||.|||||.|||||.||.||.|||||.|
RBAM_033130__ 291 GCTGATCAACCCGACCGATTCATCAGCGATTTCAACAGCCGTCGAATCGG 340
BSNT_05481___ 341 CAAACGCAGTCGGTGTGCCCGTCGTAACAATCGATCGATCTGCCGAACAA 390
||||..|..||||..|.||||||.|..|..|.|||||.||.||||||||.
RBAM_033130__ 341 CAAATTCCCTCGGCATTCCCGTCATTGCGCTTGATCGTTCAGCCGAACAC 390
BSNT_05481___ 391 GGAAAAGTTGAAACTCTCGTTGCTTCCGATAATGTAAAAGGCGGTGAAAT 440
||.|||||.|||||.||.||.||.||.||.|||||.|||||.||.|||||
RBAM_033130__ 391 GGCAAAGTCGAAACGCTTGTCGCCTCTGACAATGTCAAAGGAGGAGAAAT 440
BSNT_05481___ 441 GGCCGCGGCGTTTATTGCCGATAAACTTGGAAAAGGAGCAAAGGTGGCAG 490
|||.||.|..|...|.||||||.|.||.||||||||.||.||.||.||.|
RBAM_033130__ 441 GGCGGCTGACTACCTCGCCGATCAGCTCGGAAAAGGCGCCAAAGTAGCGG 490
BSNT_05481___ 491 AGCTTG-AAGGCGTCCCCGGCGCATCTGCCACACGGGAACGCGGCTCAGG 539
| .||| ||||.||.||.||||||||.||.||||||||||||||..|.||
RBAM_033130__ 491 A-ATTGCAAGGGGTGCCGGGCGCATCCGCGACACGGGAACGCGGAACGGG 539
BSNT_05481___ 540 ATTTCATAACATCGCAGACCAAAAGCTCCATGTTGTCACAAAACAATCAG 589
.||||||.|.||.||.|||.|||||||..||||.||.|||||.|||.|.|
RBAM_033130__ 540 CTTTCATCATATTGCCGACAAAAAGCTGGATGTCGTAACAAAGCAAGCGG 589
BSNT_05481___ 590 CTGACTTTGACCGCACGAAAGGCCTGACTGTCATGGAAAACCTGCTGCAG 639
|.||.||||||||.||.|||||..||||.|||||||||||||||||||||
RBAM_033130__ 590 CGGATTTTGACCGTACAAAAGGATTGACCGTCATGGAAAACCTGCTGCAG 639
BSNT_05481___ 640 GGACATCCTGATATCCAAGCTGTTTTTGCTCACAACGATGAAATGGCGCT 689
||||||||.|||||..||||.||.||.||.||.||.|||||||||||.||
RBAM_033130__ 640 GGACATCCGGATATTAAAGCCGTGTTCGCCCATAATGATGAAATGGCACT 689
BSNT_05481___ 690 CGGTGCTCTCGAAGCAATTAACAGCTCGGGAAAAGACATATTGGTAATCG 739
|||.||.||||||||.||||||||||||||.|||.||||.|||||..|||
RBAM_033130__ 690 CGGCGCGCTCGAAGCGATTAACAGCTCGGGCAAACACATTTTGGTCGTCG 739
BSNT_05481___ 740 GCTTTGACGGCAATAAAGACGCGCTCGCTTCCATTAAAGACGGAAAGCTG 789
|.||.|||||.||||||||.|||.|..|||||||||||.|||||||||||
RBAM_033130__ 740 GTTTCGACGGAAATAAAGATGCGATTTCTTCCATTAAAAACGGAAAGCTG 789
BSNT_05481___ 790 TCAGCCACCGTAGCTCAGCAGCCTGAATTAATCGGTAAACTGGCTACAGA 839
.|||||||.||.||.||||||||.||..|.|||||.||||||||..|.||
RBAM_033130__ 790 ACAGCCACGGTCGCCCAGCAGCCGGAGCTGATCGGAAAACTGGCGGCCGA 839
BSNT_05481___ 840 AGC-----AGCAGATGATATTTTGC-ACGGAAAAAAAGTGCAAAA-AACA 882
||| |||||.||.| | |.|||.||||||| ||||| |||.
RBAM_033130__ 840 AGCGGCGGAGCAGGTGCT------CAAAGGAGAAAAAGT-CAAAAGAACC 882
BSNT_05481___ 883 ATATCCGCGCCTCTCAAACTAGAAACACAAAAATAA 918
||.|||||.||..|.|||||..||||||||||||||
RBAM_033130__ 883 ATTTCCGCTCCATTGAAACTTCAAACACAAAAATAA 918
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.