Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05497 and RBAM_033220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:59
# Commandline: needle
# -asequence dna-align/BSNT_05497___cotH.1.9828.seq
# -bsequence dna-align/RBAM_033220___cotH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05497___cotH-RBAM_033220___cotH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05497___cotH-RBAM_033220___cotH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05497___cotH
# 2: RBAM_033220___cotH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1130
# Identity: 809/1130 (71.6%)
# Similarity: 809/1130 (71.6%)
# Gaps: 76/1130 ( 6.7%)
# Score: 2827.5
#
#
#=======================================
BSNT_05497___ 1 ATGAAGAATCAATCCAATTTACCGCTTTATCAGCTGTTTGTTCATCCAAA 50
|||||..|.|||||.|..||.||.||.||.|||||||||.||||.||.||
RBAM_033220__ 1 ATGAAAGACCAATCAACATTGCCTCTATACCAGCTGTTTATTCACCCGAA 50
BSNT_05497___ 51 AGATTTGCGTGAAT-----TAAAAAAGGATATATGGGACGATGATCCGGT 95
|||.|| ||| |.|||||.||.||.|||||.|||||||||||
RBAM_033220__ 51 AGACTT-----AATGGAGCTGAAAAAAGACATTTGGGATGATGATCCGGT 95
BSNT_05497___ 96 GCCAGCTGTGATGAAGGTAAATCAAAAAAGGCTGGATATCGATATCGCTT 145
|||.||.|||.|||..||.|||||||||.||||.||.||.|||.|.||.|
RBAM_033220__ 96 GCCCGCGGTGCTGAGAGTGAATCAAAAACGGCTTGACATTGATCTGGCGT 145
BSNT_05497___ 146 ATCGGGGATCACATATCAGAGACTTCAAAAAGAAGTCATACCATATTTCC 195
|.||.||.||.|||||.|||||.||.||.||.||.||.||.|||||..|.
RBAM_033220__ 146 ACCGCGGCTCGCATATAAGAGATTTTAAGAAAAAATCGTATCATATCGCT 195
BSNT_05497___ 196 TTTTATCAGCCGAAAACATTCCGCGGCGCGCGAGAGATTCACTTAAATGC 245
||||||..||||||||||||.|||.|.|||..||||||.||.|||||.||
RBAM_033220__ 196 TTTTATTCGCCGAAAACATTTCGCAGGGCGAAAGAGATACATTTAAACGC 245
BSNT_05497___ 246 GGAGTATAAAGACCCTTCCTTGATGAGAAACAAATTGTCTCTGGATTTTT 295
.||.||.|||||.||.||..|||||.|.||.||..|||||||.|||||.|
RBAM_033220__ 246 TGAATACAAAGATCCGTCGATGATGCGGAATAAGCTGTCTCTCGATTTCT 295
BSNT_05497___ 296 TCTCGGAGCTAGGGACACTGTCTCCAAAGGCAGAGTTTGTGT----TTGT 341
||.|||||||.|||||.|||||.|||||||| ||.||| .|| .||.
RBAM_033220__ 296 TCGCGGAGCTTGGGACGCTGTCACCAAAGGC-GAATTT-CGTAACCCTGC 343
BSNT_05497___ 342 AAAGGTGAATGGGAAGA-ATGAAGGGGTTTATCTTGAACTTGAATCCGTA 390
||| |.||| ||.||| ||||.|||||.||||||||.||.||.||.||.
RBAM_033220__ 344 AAA--TCAAT-GGCAGACATGAGGGGGTGTATCTTGAGCTGGAGTCAGTG 390
BSNT_05497___ 391 GATGAATATTATTTGGCGAAAAGGAAGCTGGCTGATGGCGCGATTTTTTA 440
||||||||||.|.||||||||.||||..||||.||.|||||..|||||||
RBAM_033220__ 391 GATGAATATTTTCTGGCGAAACGGAATTTGGCGGACGGCGCTGTTTTTTA 440
BSNT_05497___ 441 CGCGGTGGATGATGATGCTAACTTTTCTCTGATGAGCGATTTGGAAAAGG 490
||||||.|||||.||.||.||.||.||.||..|.||.|||.||||...||
RBAM_033220__ 441 CGCGGTTGATGACGACGCCAATTTCTCCCTCGTCAGTGATCTGGAGCGGG 490
BSNT_05497___ 491 AAACGAAGACGTCGCTGGAGCTTGGATATGAAAAGAAGACAGGGACTGTG 540
|.|||||.||.|||||.||.|||||.|||||||||||.||.||.||....
RBAM_033220__ 491 ATACGAAAACATCGCTCGAACTTGGTTATGAAAAGAAAACGGGAACGAAA 540
BSNT_05497___ 541 GAAGATGATTTTTATTTACAGGATATGATTTTTAAAATTAATACTGTCCC 590
|||||.|||||.||.||.|||||||||||.|.||||||||||||.||.||
RBAM_033220__ 541 GAAGACGATTTATACTTGCAGGATATGATCTATAAAATTAATACCGTGCC 590
BSNT_05497___ 591 TAAAGCTCAGTTTAAGTCAGAAGTGACA-----AAACATGTGGATGTCGA 635
.||..|..||||.||| .|.||.| |||||..||||.|.|||
RBAM_033220__ 591 GAAGTCAGAGTTCAAG-----GGGGAGATCGTCAAACACTTGGACGCCGA 635
BSNT_05497___ 636 TAAGTATTTGCGCTGGCTTGCCGGTATTGTATTCACCTCGAACTATGATG 685
||||||||||||.||||||||.||.||.||.||.|||||.|||||.||||
RBAM_033220__ 636 TAAGTATTTGCGGTGGCTTGCGGGCATCGTGTTTACCTCAAACTACGATG 685
BSNT_05497___ 686 GATTTGTCCACAACTACGCATTATACAGAAGCGG-----GGAAACCGGAT 730
||||||||||.||.|||||.||.||| ||| .|||||.|||.
RBAM_033220__ 686 GATTTGTCCATAATTACGCTTTGTAC-----CGGAATCATGAAACGGGAC 730
BSNT_05497___ 731 TATTTGAGGTGATTCCTTGGGATTATGATGCGACCTGGGGCAGGGATATC 780
|.|||||.||.|||||.||||||||.||||||||.|||||.||.||.||.
RBAM_033220__ 731 TTTTTGAAGTCATTCCGTGGGATTACGATGCGACGTGGGGAAGAGACATT 780
BSNT_05497___ 781 CATGGAGAGCGGATGGCTGCCGATTATGTAAGAATTCAAGGATTTAATAC 830
|||||.||.|||||||..|||||||||||.|||||.|||||.||||||||
RBAM_033220__ 781 CATGGTGATCGGATGGAGGCCGATTATGTCAGAATACAAGGGTTTAATAC 830
BSNT_05497___ 831 ACTAACCGCCCGGATATTGGATGAATCCG-AGTTTCGCAAGTCCTACAAG 879
..|.||.||..||.|..|||||||| ||| |.||.|||||..|.|||||.
RBAM_033220__ 831 CTTGACTGCAAGGCTTCTGGATGAA-CCGTATTTCCGCAAAGCGTACAAA 879
BSNT_05497___ 880 CGCCTGTTAGAAAAAACGCTCCAATCTCTTTTTACGATAGAATATATGGA 929
||.||.||.|||.|.|||||.||..|.|..|||||.||.|||.|||||.|
RBAM_033220__ 880 CGGCTTTTGGAAGAGACGCTTCAGACCCGGTTTACCATTGAACATATGAA 929
BSNT_05497___ 930 ACCGAAAATAATGGCGATGTATGAGCAGATTAGGCCTTTTATCTTAATGG 979
.|||||..|.|||.|..||||||||||.||.|||||...|.||...|.||
RBAM_033220__ 930 GCCGAAGGTCATGTCACTGTATGAGCATATCAGGCCGCATGTCGCGAAGG 979
BSNT_05497___ 980 ACCCATATAA-AAAGAA-TGATGTTGAGCGTTTTGACCGTGAGCCGGATG 1027
|.|||||||| |||||| .|||| ||..|.||||||||.|||||.||.|
RBAM_033220__ 980 ATCCATATAAGAAAGAAGAGATG--GATTGCTTTGACCGGGAGCCTGAAG 1027
BSNT_05497___ 1028 TGATTTGTGAGTATATTAAAAACCG-------TTCA----CAATACCTTA 1066
|||||||.||.||.|||||..|.|| |||| ||.|...|||
RBAM_033220__ 1028 TGATTTGCGAATACATTAAGGAGCGGTCCGCCTTCATCAGCAGTGAGTTA 1077
BSNT_05497___ 1067 AA-------AATAATTTAAGTATTTTATGA 1089
.| |||| |.|||
RBAM_033220__ 1078 GAGCGGTGGAATA------------TCTGA 1095
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