Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05527 and RBAM_033440

See Amino acid alignment / Visit BSNT_05527 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:00
# Commandline: needle
#    -asequence dna-align/BSNT_05527.1.9828.seq
#    -bsequence dna-align/RBAM_033440___ywqG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05527-RBAM_033440___ywqG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05527-RBAM_033440___ywqG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05527
# 2: RBAM_033440___ywqG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 808
# Identity:     335/808 (41.5%)
# Similarity:   335/808 (41.5%)
# Gaps:         365/808 (45.2%)
# Score: 1151.0
# 
#
#=======================================

BSNT_05527         0 --------------------------------------------------      0
                                                                       
RBAM_033440__      1 GTGGAAAAAACATGGAAATTGCCGAAGCAAATGGAATCATCCCGCGGTCT     50

BSNT_05527         0 --------------------------------------------------      0
                                                                       
RBAM_033440__     51 GCTGGAAACGTCAGCACGGCGCTTTATCAAACTGCACGTCAAAAAAGCTG    100

BSNT_05527         0 --------------------------------------------------      0
                                                                       
RBAM_033440__    101 AAACGGGGCGGTATGACAGTAAAATTGCCGGAGACCCCTATTTTCCGAAA    150

BSNT_05527         0 --------------------------------------------------      0
                                                                       
RBAM_033440__    151 CATGAACCATATCCTAAAGATGAAAGCGGCAGGCCGATGAAGCTTCTCGC    200

BSNT_05527         0 --------------------------------------------------      0
                                                                       
RBAM_033440__    201 TCAAATCAATTTTGCGGATATGCCCGGACTCCCTGATTTTCCGGACACCG    250

BSNT_05527         0 --------------------------------------------------      0
                                                                       
RBAM_033440__    251 GCATTCTTCAGTTTTACATATCGGTCAGTGATGACGTATACGGTCTGAAT    300

BSNT_05527         1 ---------------------------------GTGATCTATTTTGAAAA     17
                                                      ||.|..|||||||||.|
RBAM_033440__    301 TTTGACGACGGGTGCGCGCAAACGGGTTTCTGCGTCAAATATTTTGAACA    350

BSNT_05527        18 TATCATAGAAAACGAAGACGAGCTTGTTTCTGATTTTTCATT------TA     61
                     |.|.|.||.|.|.||||..|||||..|...|||||||||.||      |.
RBAM_033440__    351 TGTGACAGCAGAAGAAGCGGAGCTCATGGATGATTTTTCTTTCGTTCATG    400

BSNT_05527        62 TTGGCACAGGCGAATGTGATTTTCCGATTTTATCAGAAGCGGCAG-TCGA    110
                     || |.|.|||||  |..||||||||||||..||||||||| ||.| ||..
RBAM_033440__    401 TT-GAAGAGGCG--TACGATTTTCCGATTCAATCAGAAGC-GCTGATCAC    446

BSNT_05527       111 GCCTGTGAAATCTTCGGAATGGGTGCTGCCTACAGATTTTCAATTTGAGC    160
                     .||||.|...|||.|.|||||||||||.||..|.|||||||||||...||
RBAM_033440__    447 CCCTGAGCTGTCTGCTGAATGGGTGCTCCCGTCTGATTTTCAATTCAGGC    496

BSNT_05527       161 AGTATACGGGCATGGAAACAATGGAGTTCTTTGGTCAGTTCGGCGA----    206
                     |||||.|.||.|||||..|..|.||.|..||.|..|||||.|.|||    
RBAM_033440__    497 AGTATGCCGGGATGGATGCCTTTGACTATTTCGAGCAGTTTGACGATGAG    546

BSNT_05527       207 --GGATGAAGAAGACATTTATAATGAACTGGCTGAAAACGGATTTGGCCA    254
                       |.||||.|||      ||||         |.|..||||.|||.|||||
RBAM_033440__    547 GTGTATGACGAA------TATA---------CGGCGAACGCATTCGGCCA    581

BSNT_05527       255 TAAAATCGGCGGATACGCTTCTTTTACCCAGCATGATCCACGGGAATACG    304
                     ||||||||||||.||.||.||.||.||||||.|.|||||.|||...|||.
RBAM_033440__    582 TAAAATCGGCGGCTATGCGTCCTTCACCCAGGAAGATCCGCGGTCTTACT    631

BSNT_05527       305 CATATAAAGAACACACCATCATGCTTTTACAAATTGATTCAGACGATGAT    354
                     |..||.||.|.||.||.||..|||||||.||||||||||||||.|||||.
RBAM_033440__    632 CCCATCAAAACCATACGATTCTGCTTTTGCAAATTGATTCAGATGATGAC    681

BSNT_05527       355 ATCGATTCAATGTGGGGAGACGTCGGCATCGCCAATTTTTTCATCACACC    404
                     ||.|||||.|||||||||||.||.||.|||||||||||.||.||||.|||
RBAM_033440__    682 ATTGATTCGATGTGGGGAGATGTGGGAATCGCCAATTTCTTTATCAGACC    731

BSNT_05527       405 TGACGATCTAAGGAAAAAAGACTTTTCAAACGTTCTGTATAACTGGGACT    454
                     .||.|||.|.|.||.||||||.||.|||||||||.||||.||||||||||
RBAM_033440__    732 GGAAGATTTGAAGAGAAAAGATTTCTCAAACGTTTTGTACAACTGGGACT    781

BSNT_05527       455 GCAGCTAA    462
                     ||||.|||
RBAM_033440__    782 GCAGTTAA    789


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