Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05530 and RBAM_033450

See Amino acid alignment / Visit BSNT_05530 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:00
# Commandline: needle
#    -asequence dna-align/BSNT_05530___ywqF.1.9828.seq
#    -bsequence dna-align/RBAM_033450___ywqF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05530___ywqF-RBAM_033450___ywqF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05530___ywqF-RBAM_033450___ywqF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05530___ywqF
# 2: RBAM_033450___ywqF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1382
# Identity:     981/1382 (71.0%)
# Similarity:   981/1382 (71.0%)
# Gaps:         115/1382 ( 8.3%)
# Score: 3401.5
# 
#
#=======================================

BSNT_05530___      1 ATGAATATAACAGTCATCGGAACAGGCTATGTCGGTCTTGTGACAGGTGT     50
                     |||||.||||||||.||||||||||||||.|||||||||||||||||.||
RBAM_033450__      1 ATGAAAATAACAGTGATCGGAACAGGCTACGTCGGTCTTGTGACAGGAGT     50

BSNT_05530___     51 TTCTCTTTCTGAGATTGGACATCATGTAACCTGCATTGATATTGACGCTC    100
                     .||||||||.||.||.||.|||.|.|||||.|||||.||.|||||||..|
RBAM_033450__     51 GTCTCTTTCAGAAATCGGCCATGACGTAACATGCATAGACATTGACGAAC    100

BSNT_05530___    101 ACAAGATTGATGAAATGAGAAAGGGCATTTCCCCCATATTTGAACCAGGT    150
                     ..|||.||||..|.||||||||||||.|.|||||.||.||||||||.||.
RBAM_033450__    101 GTAAGGTTGAGCAGATGAGAAAGGGCTTGTCCCCTATCTTTGAACCGGGC    150

BSNT_05530___    151 CTTGAAGAGCTGATGAGAAAAAATA-CAGCTG--ATGGACGGCTGAACTT    197
                     ||||||||..||||||.|..||||| |.||.|  ||   ||||||...||
RBAM_033450__    151 CTTGAAGATATGATGAAACGAAATATCGGCCGGCAT---CGGCTGGCATT    197

BSNT_05530___    198 TGAAAAAAGCTATGAGAAA-GGCTTGGCACAGGCAGACATCATTTTTATA    246
                     |||||..|||||.||.||| ||||| ||..|.||.|||.|.|||||||||
RBAM_033450__    198 TGAAACGAGCTACGAAAAAGGGCTT-GCGGAAGCTGACGTTATTTTTATA    246

BSNT_05530___    247 GCGGTCGGCACACCGCAGAAAAG-CGATGGGCACGCCAATCTGGAGCAAA    295
                     ||||||||.||.||||| ||||| .||.||||||||.||.||.....|.|
RBAM_033450__    247 GCGGTCGGAACGCCGCA-AAAAGAAGACGGGCACGCAAACCTTACTTATA    295

BSNT_05530___    296 TTACAGATGCGGCCAAACGCATCGCAAAGCA----TGTCAAACGAGATAC    341
                     ||..|.|||..|||.||||.||.||..|.||    |||.|    ||||.|
RBAM_033450__    296 TTGAAAATGTCGCCGAACGGATTGCCGAACATATTTGTAA----AGATGC    341

BSNT_05530___    342 AGTCGTGGTAACGAAAAGCACAGTGCCCGTTGGGACAAA-----------    380
                     ..||||.||.||.||||||||.||.|||||.||.||.||           
RBAM_033450__    342 GATCGTCGTGACAAAAAGCACGGTTCCCGTGGGAACGAATGACAGGATCA    391

BSNT_05530___    381 -CGATTTGATTAATGGACTGATCACTGAACATCTAGCGGAGCCTGTCAGT    429
                      |||..|.|||.||..||.|    |||||     ||||||   .||.|..
RBAM_033450__    392 GCGAAGTTATTCATTCACGG----CTGAA-----AGCGGA---CGTGAAC    429

BSNT_05530___    430 ATTTCGGTTGCATCCAATCCGGAATTTTTGCGTGAGGGGTCGGCGATCTA    479
                     |||||..|.||.||.||||||||||||.|.|||||.||.|||||.||..|
RBAM_033450__    430 ATTTCAATCGCCTCGAATCCGGAATTTCTCCGTGAAGGTTCGGCAATTCA    479

BSNT_05530___    480 TGATACCTTTCATGGTGACAGGATCGTGATCGGGACGGCCGATGA---GA    526
                     .|||||||||||.||.|||.|.|||||||||||   |||.||.||   |.
RBAM_033450__    480 CGATACCTTTCACGGCGACCGCATCGTGATCGG---GGCTGAAGACCGGC    526

BSNT_05530___    527 AAACAGC---AAATACGCTGGAGGAGCTCTTC-CGTCCGTTTCAAATCCC    572
                     |.|| ||   ||  |||||.||...|.|.||| || |||.||...||.||
RBAM_033450__    527 AGAC-GCGGGAA--ACGCTTGACCGGGTTTTCGCG-CCGCTTGCGATTCC    572

BSNT_05530___    573 GATTTACCAAACGGATATCAGAAGCGCCGAGATGATCAAATATGCCTCAA    622
                     |.|.||.||.|||||.|||||||||||.|||||||||||||||||.||||
RBAM_033450__    573 GGTATATCATACGGACATCAGAAGCGCTGAGATGATCAAATATGCGTCAA    622

BSNT_05530___    623 ATGCTTTTCTGGCCACTAAGATCAGTTTTATAAACGAAATTTCGAATATA    672
                     |.||.|||.|.||..|.||.|||||||||||.||.||||||||..|||||
RBAM_033450__    623 ACGCATTTTTAGCGGCAAAAATCAGTTTTATTAATGAAATTTCTCATATA    672

BSNT_05530___    673 TGTGAAAAGGTCGGCGCCGATATTGAAGCAGTCGCATACGGGATGGGACA    722
                     ||||||||.|||||.||.|||.|.|||.||||||||.||||.||||||..
RBAM_033450__    673 TGTGAAAAAGTCGGTGCGGATGTGGAATCAGTCGCACACGGAATGGGATT    722

BSNT_05530___    723 GGATAAGCGGATCGGGAGCCAGTTTTTAAAAGCGGGTATAGGCTACGGCG    772
                     ||||||.||||||||.|..||.||.||||.|||.||.||.||.|||||||
RBAM_033450__    723 GGATAAACGGATCGGCAATCAATTCTTAAGAGCCGGCATCGGTTACGGCG    772

BSNT_05530___    773 GCTCTTGTTTTCCAAAGGACACAAACGCCCTCGTGCAAATTGCCGGCAAT    822
                     |.||.||||||||.|||||.|||||||||||||||||.||.||.||..||
RBAM_033450__    773 GTTCCTGTTTTCCGAAGGATACAAACGCCCTCGTGCAGATCGCGGGACAT    822

BSNT_05530___    823 GTCGAGCATGATTTTGAACTGCTGAAATCGGTTATCAAAGTCAATAACAA    872
                     ||.|||||||||||||||.|||||||.||.||.||.||||||||.||.||
RBAM_033450__    823 GTGGAGCATGATTTTGAATTGCTGAAGTCCGTCATTAAAGTCAACAATAA    872

BSNT_05530___    873 TCAGCAGGCGATGCTGGTTGATAAAGCGCTGAACAGGCTCGGCGGGGTGA    922
                     .||||||.|.||||||||||||||||.||||||||||||||||||.||||
RBAM_033450__    873 CCAGCAGTCCATGCTGGTTGATAAAGTGCTGAACAGGCTCGGCGGTGTGA    922

BSNT_05530___    923 CGGGAAAAACGATTGCCCTTTTAGGCCTGTCATTTAAACCGAATACGGAC    972
                     |.||.||.||.||.||..|.|||||.|||||.|||||.||||||||.||.
RBAM_033450__    923 CAGGGAAGACCATCGCGTTATTAGGGCTGTCTTTTAAGCCGAATACAGAT    972

BSNT_05530___    973 GATATGAGAGAAGCGCCGTCAATTGTTATTGCAGACCGTCTCGCTGCGCT   1022
                     ||||||.|.||.||.|||||.|||||.||||||||.|||||.||.||.||
RBAM_033450__    973 GATATGCGGGATGCCCCGTCCATTGTCATTGCAGATCGTCTGGCGGCTCT   1022

BSNT_05530___   1023 CGACGCCCGTATCAGAGCCTACGATCCCATTGCAGTTGGTCATGCAAAGC   1072
                     .||||||||.||.|.|||.||||||||.||.||     .||||.|...||
RBAM_033450__   1023 TGACGCCCGGATGACAGCGTACGATCCGATCGC-----TTCATTCCGGGC   1067

BSNT_05530___   1073 ATGTTC---------TCCCGCAAGCTGTTGAA------TATAAAGAGACG   1107
                        |||         |||.||       ||||      |||...|||.|.
RBAM_033450__   1068 ---TTCCGGGCTGCTTCCGGC-------TGAAGTTTCCTATCGGGAGTCC   1107

BSNT_05530___   1108 ATCGAGGAAGCTGTCAAAGGTTCTGACGCCGTCATGATTTTAACCGACTG   1157
                     ||.||.|||||.||||..||..|.||.||||||.|||||.|.||.||.||
RBAM_033450__   1108 ATAGAAGAAGCCGTCAGGGGAGCGGATGCCGTCCTGATTCTGACAGATTG   1157

BSNT_05530___   1158 GGCTGACATTAAACAATTTCCGTTAGCGGCTTATCAGGATTTGATGGAAT   1207
                     ||...|.||||||||.||.|||.|.|..||.||..|.||..||||||||.
RBAM_033450__   1158 GGAACAAATTAAACACTTCCCGCTTGAAGCGTACAAAGAGCTGATGGAAA   1207

BSNT_05530___   1208 CGCCGCTCATATTTGACGGCAGAAACTGCTACACATTGGATGAAGCTG--   1255
                     |.|||.|.||.||.|||||.|||||||||.||.|..|.||.|||||.|  
RBAM_033450__   1208 CCCCGGTTATTTTCGACGGGAGAAACTGCCACTCGCTTGAGGAAGCGGAA   1257

BSNT_05530___   1256 -CGGCTGTAGGAGTGGAGTATTATTCTGTCGGTCGGAAG----GCGGTTG   1300
                      .|||   .||.|||||.||    |.|.||..|||||||    ||.||.|
RBAM_033450__   1258 CAGGC---GGGCGTGGAATA----TATCTCAATCGGAAGAAGAGCCGTCG   1300

BSNT_05530___   1301 TTCCGTCAG---------GTGCAATTCAATAG   1323
                     |.|| ||||         || ||.||.|    
RBAM_033450__   1301 TGCC-TCAGACTGATTCTGT-CACTTGA----   1326


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