Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05541 and RBAM_033520

See Amino acid alignment / Visit BSNT_05541 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:02
# Commandline: needle
#    -asequence dna-align/BSNT_05541___glcR.1.9828.seq
#    -bsequence dna-align/RBAM_033520___glcR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05541___glcR-RBAM_033520___glcR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05541___glcR-RBAM_033520___glcR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05541___glcR
# 2: RBAM_033520___glcR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 831
# Identity:     570/831 (68.6%)
# Similarity:   570/831 (68.6%)
# Gaps:          75/831 ( 9.0%)
# Score: 1968.0
# 
#
#=======================================

BSNT_05541___      1 ATGATTGCTGAGAAAAGGAATGAGGGCGTGTACCAAGAAGAAAGATTAGT     50
                                                |||||.||||||||||||.|..|
RBAM_033520__      1 ---------------------------GTGTATCAAGAAGAAAGACTGAT     23

BSNT_05541___     51 AGCGATTTTGGATTTTTTAAAACAGCATAACCGAATTACAACGGAGCAGA    100
                     .|||||..||||.|.|||.|||||||||...||.||.||..|.||.||||
RBAM_033520__     24 TGCGATAATGGAATATTTGAAACAGCATCGGCGGATCACCGCTGAACAGA     73

BSNT_05541___    101 TCTGTACGCTCCTGCAAGTGTCAAGGGATACAGCGCGACGAGATCTTGTG    150
                     |.|||.||||.||.||..|.|||||.|||||.||..||.|.||.|||||.
RBAM_033520__     74 TATGTTCGCTGCTTCATATTTCAAGAGATACCGCAAGAAGGGACCTTGTA    123

BSNT_05541___    151 AAACTTGAGGAACAGA-----ATGCCATCATCCGCACAAGAGGCGGCGCC    195
                     ||.||    ||| |||     ..|||||.|||.|.|||.|.||||||||.
RBAM_033520__    124 AAGCT----GAA-AGAGCGCGGGGCCATTATCAGAACACGGGGCGGCGCG    168

BSNT_05541___    196 ATTTTACCGACTGTGCATCAGAAAATTCAAAGCTATTCCGGCCGCCTGAA    245
                     |||.|.|||.|.|||.|||||.|..|||...|||||||.|||||.|||||
RBAM_033520__    169 ATTCTGCCGTCGGTGAATCAGGAGGTTCCTGGCTATTCGGGCCGGCTGAA    218

BSNT_05541___    246 AACAGTGTCTGAGGAAAAAAATAAGATCGGCAGGCTTGCAGCATCGCTTA    295
                     |||.||.|||||.||.|||||.||.|||||||.|||.||.|||||.||.|
RBAM_033520__    219 AACTGTTTCTGAAGAGAAAAACAAAATCGGCAAGCTGGCCGCATCCCTGA    268

BSNT_05541___    296 TTCATGATGGAGACCGGGTGATTTTAGACGCCTCTACAACTGTTCAGGCA    345
                     |.|||.|.|||||||||.|.|||.|.|||.||||.|||||.||.|||||.
RBAM_033520__    269 TCCATAAAGGAGACCGGATCATTCTGGACACCTCGACAACCGTGCAGGCC    318

BSNT_05541___    346 TGTGCAAAGCATTTGAATG----CGGTTGATTGTACCGTAATCACCAATT    391
                     ||.||..|||||||.||||    |||    .||.||.||.||.||.||||
RBAM_033520__    319 TGCGCGGAGCATTTAAATGTCACCGG----CTGCACTGTTATTACAAATT    364

BSNT_05541___    392 CGATTAATCTTGCGGATGTGCTGTCCGATAAAGAGGGAATTGAAATTTAT    441
                     ||||.||||..||.|||.|.||.||||..||||||||||||||.|||.|.
RBAM_033520__    365 CGATCAATCAGGCCGATATCCTTTCCGCAAAAGAGGGAATTGATATTCAC    414

BSNT_05541___    442 CTGCTGGGAGGCAAGCTGGAAAAGGAGCACCGCTTTCTGTACGGGTCCTC    491
                     |||||.||.||.|||||..|.|||||.|||||.|||.|.||||||.|.||
RBAM_033520__    415 CTGCTCGGCGGAAAGCTCCAGAAGGAACACCGGTTTTTATACGGGGCTTC    464

BSNT_05541___    492 TGTGATTGAAAAGCTCTCAAG-----CTACCATGTTGATAAAGCGCTGAT    536
                     .||..|.|||||.||     |     .||.||.|..|||||.|.||||||
RBAM_033520__    465 CGTCGTAGAAAAACT-----GGGGGATTATCACGCCGATAAGGTGCTGAT    509

BSNT_05541___    537 TGGTGTGGTCGGCATTTCCGAACATGGCATTACAATTGCGCATGAAGAGG    586
                     .||.||.||||||||.||.|||.|.|||.|.||.|||.||||||||||.|
RBAM_033520__    510 CGGCGTTGTCGGCATCTCGGAAAACGGCCTGACGATTCCGCATGAAGAAG    559

BSNT_05541___    587 ATGGCATGGTGAAGCGGAAAATGATACAGCAGGCAAAGCAGGTAATCGCG    636
                     ||||||||||.|||||.||||||||.|..|||||..|.|||||.||.|||
RBAM_033520__    560 ATGGCATGGTAAAGCGTAAAATGATCCGACAGGCGGAACAGGTGATTGCG    609

BSNT_05541___    637 CT-TGCAGACCATTCTAAGCTGGGCAGCACCAGTTTTTATCAGTATGCGG    685
                     || .|| ||.||.||.|||||.|||.|.||.|||||||||||||||||.|
RBAM_033520__    610 CTGAGC-GATCACTCCAAGCTTGGCCGTACGAGTTTTTATCAGTATGCAG    658

BSNT_05541___    686 AGCTGAATGAAATCGACCTTTTGATTACAGACAGGCTTCCGAATCAGGCA    735
                     |.|||.|.||..|.|||||..|||||||.||..||||.||..||||||..
RBAM_033520__    659 ACCTGCACGAGGTTGACCTGCTGATTACCGATCGGCTGCCTGATCAGGAT    708

BSNT_05541___    736 TTTTGTGACTTGCTTGACCGAAACGGCGTTGAGCTTCTCGTGAC------    779
                     |||||.||..||||.|||||..|||||||.||..|.||.||.||      
RBAM_033520__    709 TTTTGCGATCTGCTCGACCGGCACGGCGTAGAATTGCTTGTAACTGAATC    758

BSNT_05541___    780 ---AGAGCAGGATGAAGGAAAGGAC---TGA    804
                        |||..||||||      |||||   |||
RBAM_033520__    759 TGAAGAAGAGGATG------AGGACATGTGA    783


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05541 and RBAM_033520

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
