Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05541 and RBAM_033520
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:02
# Commandline: needle
# -asequence pep-align/BSNT_05541___glcR.1.9828.seq
# -bsequence pep-align/RBAM_033520___glcR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05541___glcR-RBAM_033520___glcR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05541___glcR-RBAM_033520___glcR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05541___glcR
# 2: RBAM_033520___glcR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 269
# Identity: 201/269 (74.7%)
# Similarity: 235/269 (87.4%)
# Gaps: 11/269 ( 4.1%)
# Score: 1055.0
#
#
#=======================================
BSNT_05541___ 1 MIAEKRNEGVYQEERLVAILDFLKQHNRITTEQICTLLQVSRDTARRDLV 50
:||||||:||:::||||.|||.||||:||.:||||||||||
RBAM_033520__ 1 ---------MYQEERLIAIMEYLKQHRRITAEQICSLLHISRDTARRDLV 41
BSNT_05541___ 51 KLEEQNAIIRTRGGAILPTVHQKIQSYSGRLKTVSEEKNKIGRLAASLIH 100
||:|:.||||||||||||:|:|::..||||||||||||||||:|||||||
RBAM_033520__ 42 KLKERGAIIRTRGGAILPSVNQEVPGYSGRLKTVSEEKNKIGKLAASLIH 91
BSNT_05541___ 101 DGDRVILDASTTVQACAKHLNAVDCTVITNSINLADVLSDKEGIEIYLLG 150
.|||:|||.||||||||:|||...|||||||||.||:||.||||:|:|||
RBAM_033520__ 92 KGDRIILDTSTTVQACAEHLNVTGCTVITNSINQADILSAKEGIDIHLLG 141
BSNT_05541___ 151 GKLEKEHRFLYGSSVIEKLSSYHVDKALIGVVGISEHGITIAHEEDGMVK 200
|||:||||||||:||:|||..||.||.|||||||||:|:||.||||||||
RBAM_033520__ 142 GKLQKEHRFLYGASVVEKLGDYHADKVLIGVVGISENGLTIPHEEDGMVK 191
BSNT_05541___ 201 RKMIQQAKQVIALADHSKLGSTSFYQYAELNEIDLLITDRLPNQAFCDLL 250
||||:||:|||||:||||||.|||||||:|:|:|||||||||:|.|||||
RBAM_033520__ 192 RKMIRQAEQVIALSDHSKLGRTSFYQYADLHEVDLLITDRLPDQDFCDLL 241
BSNT_05541___ 251 DRNGVELLVTEQDEGKD-- 267
||:||||||||.:|..:
RBAM_033520__ 242 DRHGVELLVTESEEEDEDM 260
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