Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05568 and RBAM_033660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:03
# Commandline: needle
# -asequence dna-align/BSNT_05568___ywoD.1.9828.seq
# -bsequence dna-align/RBAM_033660___ywoD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05568___ywoD-RBAM_033660___ywoD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05568___ywoD-RBAM_033660___ywoD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05568___ywoD
# 2: RBAM_033660___ywoD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1402
# Identity: 1035/1402 (73.8%)
# Similarity: 1035/1402 (73.8%)
# Gaps: 80/1402 ( 5.7%)
# Score: 3711.5
#
#
#=======================================
BSNT_05568___ 1 ATG---TTGTCGAAAAAAAGCCGGG--CTGTTTTTTTAACAGCGGTGGCT 45
||| .|.||.|||||||||||.| ||| ||.||.||.||.||||||
RBAM_033660__ 1 ATGACAATCTCCAAAAAAAGCCGCGTCCTG--TTCTTGACGGCCGTGGCT 48
BSNT_05568___ 46 TCGGGAACAATGCTGAATCCGCTGAACTCGTCTATGATCTCTCTTGCGCT 95
|||||.||.||||||||.||..||||||||||.|||||.|||||||||||
RBAM_033660__ 49 TCGGGGACGATGCTGAACCCATTGAACTCGTCGATGATTTCTCTTGCGCT 98
BSNT_05568___ 96 CCATAGCATCCAGCATGAGTTTCACCTCTCGTTTACAACGGTTTCCTGGC 145
.||.||.||.||||||||.||||||||.||||||||||||||.|||||||
RBAM_033660__ 99 TCACAGTATTCAGCATGAATTTCACCTGTCGTTTACAACGGTGTCCTGGC 148
BSNT_05568___ 146 TGATTTCCTCGTTTTACTTGGCGAGTGCCGTAGCGCAGCCGGTTACGGGA 195
||||.||.||.|||||..||||.||.||.||.||||||||.|||||.||.
RBAM_033660__ 149 TGATATCGTCCTTTTATCTGGCCAGCGCGGTGGCGCAGCCTGTTACCGGG 198
BSNT_05568___ 196 AAGCTCGGTGATTTGATTGGGCGGAA-ACGCTTGTTTTTATTCGGGCTTA 244
||||||||||||.||.|.||..|||| |.|| |||||||..||||||||.
RBAM_033660__ 199 AAGCTCGGTGATATGCTCGGCAGGAAGAAGC-TGTTTTTGATCGGGCTTC 247
BSNT_05568___ 245 TTCTTGTTGCGGTTTCTGCCATCGGGGCGCCGTTTGCGCCGACGTTTATG 294
|.||||||||.||.||.||..||||.|||||||||||||||||.||||||
RBAM_033660__ 248 TGCTTGTTGCTGTCTCGGCGGTCGGCGCGCCGTTTGCGCCGACTTTTATG 297
BSNT_05568___ 295 ACATTATTGGTCATGCGGCTGTTTCAATCGGTGGGGAGCAGCGCGATTTA 344
||.||..||.||||||||||.|||||||||.|.||.|||||||||||.||
RBAM_033660__ 298 ACTTTGCTGATCATGCGGCTTTTTCAATCGATCGGAAGCAGCGCGATATA 347
BSNT_05568___ 345 TCCGTCAGGTGTCGGCTTGATTCGGAATC--ATATTCATGAGCGCCAAGC 392
||||||.||.|||||.|||||.|| .|| ||||.||.|||...||.||
RBAM_033660__ 348 TCCGTCCGGCGTCGGATTGATCCG--TTCAAATATACAGGAGAAGCAGGC 395
BSNT_05568___ 393 TTCAGCCTTGGCTGTACTCTCTATTTTTGCGTCCGCCATGACGGCGCTGG 442
|||.||..||||.||.||.||.||.|||||.||.||||||||||||||.|
RBAM_033660__ 396 TTCGGCGCTGGCCGTCCTGTCAATCTTTGCATCAGCCATGACGGCGCTCG 445
BSNT_05568___ 443 GGCCGACAGTCGGCGGTTTTTTGATTGTATGGGGAGGCTGGCCGGCGATC 492
|.|||||..|||||||||||.||||.||.||||||||.||||||||||||
RBAM_033660__ 446 GTCCGACTCTCGGCGGTTTTCTGATCGTTTGGGGAGGGTGGCCGGCGATC 495
BSNT_05568___ 493 TTTATCGTTAATTTGCCGTTTATTATCCTCAGCTTCTTATTGGGCCTGTA 542
|||.||||.|||.||||||||||.||.||||||||.||..|.||..||||
RBAM_033660__ 496 TTTTTCGTCAATCTGCCGTTTATCATTCTCAGCTTTTTTCTCGGAATGTA 545
BSNT_05568___ 543 TATGTTCCCGAAAGATCAGAAAAA------AGGGGCAGGAATCAAAACCA 586
||||||.||||||||| |||||| |..||| ||..|.|||..|.
RBAM_033660__ 546 TATGTTTCCGAAAGAT--GAAAAACGCGAGATCGGC-GGCTTGAAAGGCG 592
BSNT_05568___ 587 TTATTCAGCAGCTCGACATTCTTGGAATTGTTTTATTTGCCGGGGGAATC 636
|..|.|..|||||.||.|...|.||.||..|..|.|||||||| |.|
RBAM_033660__ 593 TGCTCCGCCAGCTTGATACGATCGGGATACTCCTGTTTGCCGG----AGC 638
BSNT_05568___ 637 -ATTTTCCTT---CTATCCTTTTTGCTGTCGTTCAGCACGTCGCCGC--- 679
|||.||||| ||.||.|||||..||||.|||||.|||..|||.|
RBAM_033660__ 639 GATTATCCTTCTCCTGTCGTTTTTATTGTCCTTCAGTACGAAGCCTCACT 688
BSNT_05568___ 680 ATGCGGTTGAAGGTGTGCTTGGCTTGCTTCTGCTCTGT---GC-GTTTGT 725
||.| .|||||.||..|.|| ||||.|| |.||| || ||||.|
RBAM_033660__ 689 ATAC---AGAAGGCGTATTCGG---GCTTTTG-TTTGTCGGGCTGTTTAT 731
BSNT_05568___ 726 CTGGCGCGAGCTGAAAACGGATAAGCCGTTTATTGATGTCCGTCTGTTTA 775
||||||||||||||||||.||.||||||||||||||||||.|.|||||||
RBAM_033660__ 732 CTGGCGCGAGCTGAAAACAGAGAAGCCGTTTATTGATGTCAGGCTGTTTA 781
BSNT_05568___ 776 AAACACAGCGAAACCTGTCAGCCGTGTATGTTCAGTTTATTTTATTGAAT 825
||||.||.||.||.||.||..|.||||||.||||.||||||||..|||||
RBAM_033660__ 782 AAACGCATCGGAAACTATCGTCGGTGTATATTCAATTTATTTTGCTGAAT 831
BSNT_05568___ 826 GTTTTCTTCTATTGTTTATTTTTTGGTCTGCCAAGTTACTTTCAGGATGA 875
.|.|||||.||.||..|.|||||.||.||.||.||.||.|||||||||||
RBAM_033660__ 832 ATATTCTTTTACTGCATCTTTTTCGGGCTTCCGAGCTATTTTCAGGATGA 881
BSNT_05568___ 876 AATGCATCTTTCTGTTCAAACGAGCGGCCTGTTTATGCTGTTTATGTCTG 925
|||||||.|.||.|||||.||.|||||..||.||||||||||||||||.|
RBAM_033660__ 882 AATGCATTTGTCCGTTCAGACAAGCGGGTTGATTATGCTGTTTATGTCGG 931
BSNT_05568___ 926 GAATGAGCATCGTTGTGTCACCTTTAACTGGAAAATGGATCGA-CCGATC 974
|.|||||.||..|.|||||.|||.|.||.|||||||||||.|| ..||..
RBAM_033660__ 932 GCATGAGTATTCTGGTGTCGCCTCTGACCGGAAAATGGATAGATAAGAAA 981
BSNT_05568___ 975 TGGTGTCGTCAAACCGATCTTTGCGGGAGC--GCTTTTGATGACGGC--- 1019
.||..||.|| |.|||||..||||.|||.| || .||||.||
RBAM_033660__ 982 GGGCTTCTTC-AGCCGATTGTTGCCGGAACCTGC-----CTGACTGCGAT 1025
BSNT_05568___ 1020 TGGAGCCGTGCTCTTAACCATCTTTTTTAT--------CAATGTCGAGAC 1061
.||.||.|||||.|||||..|.||.|||.| |.|||
RBAM_033660__ 1026 CGGGGCGGTGCTGTTAACGTTTTTCTTTCTTCAGGCGCCTATG------- 1068
BSNT_05568___ 1062 CATTGGGAAAGGCCTCATTCTATCGCTCTTGGGTATAGGCTACGGACTGG 1111
||.||.|||||.||.||.||.||..|..|||||.|.||||||||.||.|
RBAM_033660__ 1069 -ATAGGAAAAGGGCTGATCCTGTCCGTGCTGGGTGTCGGCTACGGCCTCG 1117
BSNT_05568___ 1112 GAAATGTCGCGCTTCAGGCAGCGATGCTGAAAACGAGTCCTTCCAACATG 1161
||||||||.||.|||||||.||.||||||||||||||.|||.||.|||||
RBAM_033660__ 1118 GAAATGTCACGTTTCAGGCGGCCATGCTGAAAACGAGCCCTGCCGACATG 1167
BSNT_05568___ 1162 GTAGGAACGACTTCAGGCCTGTTTCAAACCTGCCGTTACCTAGGATCGAT 1211
||.|||||.||.||.|||||||||||.||||||||.||.||.||.|||||
RBAM_033660__ 1168 GTCGGAACAACGTCCGGCCTGTTTCAGACCTGCCGGTATCTCGGTTCGAT 1217
BSNT_05568___ 1212 TTTGTCTTCGGTGATCCTTGGCATTCTTTTTGGTAAAGAAATCACGGCAG 1261
|||||||||.||.||..|.|||||||||||.||.||||||||.||.||.|
RBAM_033660__ 1218 TTTGTCTTCTGTCATTTTGGGCATTCTTTTCGGAAAAGAAATTACCGCCG 1267
BSNT_05568___ 1262 CCCATTTTGATATGATGGGAATCATTATGATCATAGCGGGCGGAGCAAGC 1311
.|||||||.|||||.|.||.|..|||.|.|||.|.|..||||..|.||||
RBAM_033660__ 1268 GCCATTTTCATATGCTTGGGACGATTCTTATCGTTGTCGGCGCTGTAAGC 1317
BSNT_05568___ 1312 CTGTTAATGGCTGTGAGATTTGCTG----CATTAATGAAAACTGCATCTT 1357
||.||.|||||..|..|.|||.|.| |.|.|| |||| ||.||||
RBAM_033660__ 1318 CTTTTGATGGCGTTCCGGTTTTCGGTTCTCCTCAA--AAAA--GCCTCTT 1363
BSNT_05568___ 1358 AA 1359
||
RBAM_033660__ 1364 AA 1365
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