Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05578 and RBAM_033720
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:04
# Commandline: needle
# -asequence dna-align/BSNT_05578___ywnJ.1.9828.seq
# -bsequence dna-align/RBAM_033720___ywnJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05578___ywnJ-RBAM_033720___ywnJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05578___ywnJ-RBAM_033720___ywnJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05578___ywnJ
# 2: RBAM_033720___ywnJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 482
# Identity: 277/482 (57.5%)
# Similarity: 277/482 (57.5%)
# Gaps: 118/482 (24.5%)
# Score: 735.0
#
#
#=======================================
BSNT_05578___ 1 ATGAA-----------CCGCC-TATTGCTCGCAGGCTGGATCTTTTTTAT 38
||||| |.||| ..|.||||| |||||.||.|
RBAM_033720__ 1 ATGAATAAATGTCTGGCGGCCGGGTGGCTCG---------TCTTTGTTTT 41
BSNT_05578___ 39 C----CTGCTTTCTGTCTGTACGGAAAGC-TTCAGCGGCATGGTCGTATC 83
| |.||||| .||.|||||| |||| ||..|||.|.||.||
RBAM_033720__ 42 CGTTTCGGCTTT-------GACTGAAAGCTTTCA-CGATATGATTGTGTC 83
BSNT_05578___ 84 GCAAACGGTGGCTTTTCATTTTCA-GCCGCACCCTGAACTGTC-----TC 127
|||.||||||.| .|||..||||| ||||||.||.||..|||| ||
RBAM_033720__ 84 GCAGACGGTGTC-CTTCCGTTTCACGCCGCATCCGGATGTGTCCGGTTTC 132
BSNT_05578___ 128 AATTT---TTAGTTATGGATTTTACTGAGCTTACTGTACCTGAAGCGTTT 174
||| ||.|.||||| |.|||||..|..||||.||||||.|.
RBAM_033720__ 133 --TTTGTGTTCGATATGG------CGGAGCTCGCCATACCGGAAGCGGTG 174
BSNT_05578___ 175 ATTCAAAAAATCGGACACGCGTTTTCCTTCTTTGTGCTGACATATTTGCT 224
||||||||..||||.|||||||||||.||.||||||||..|.||||||.|
RBAM_033720__ 175 ATTCAAAAGCTCGGGCACGCGTTTTCATTTTTTGTGCTCGCCTATTTGTT 224
BSNT_05578___ 225 GT----GGAAACAGCG-GGGCAGCAT-AAGATCAGCTTCAGCCGGTTC-G 267
.| || |||| .||| |||| |||| .|.||||.| |
RBAM_033720__ 225 TTTCAGGG----AGCGCAGGC-GCATGAAGA--------GGGCGGTGCTG 261
BSNT_05578___ 268 TTTGCGTT------TGCTTTTTTTACAGAAGTTCTTCAGCTCTTCTTCAG 311
|.|||.|| .|||||..|.||||||.|..|.||||||||.|||.|
RBAM_033720__ 262 TATGCATTGGCCGCCGCTTTCCTGACAGAAATCGTCCAGCTCTTTTTCGG 311
BSNT_05578___ 312 CAGGAACGGTTGTATTCGGGATGTGCTCATCGATGCTGTTGGTATTGGAT 361
|||.|||||.||..|.||.||||||||.||.||...|.|.||.||||...
RBAM_033720__ 312 CAGAAACGGATGCCTCCGCGATGTGCTGATTGACAGTCTCGGCATTGCCG 361
BSNT_05578___ 362 TGTTTTATGTTTTATATGTGTTGGCGAAGCGAAGAAA------------- 398
..||.|.||.|||| |.||| ||| |||
RBAM_033720__ 362 CATTCTGTGCTTTA----------CAAAG-GAA-AAAGCATACAGCCAAA 399
BSNT_05578___ 399 ---ACAAGA----GATGTATGAGAAATATTAA 423
||||.| |..||.||.||
RBAM_033720__ 400 CATACAAAAACCGGCAGTCTGTGA-------- 423
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