Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05601 and RBAM_033860

See Amino acid alignment / Visit BSNT_05601 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:06
# Commandline: needle
#    -asequence dna-align/BSNT_05601___rapB.1.9828.seq
#    -bsequence dna-align/RBAM_033860___rapB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05601___rapB-RBAM_033860___rapB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05601___rapB-RBAM_033860___rapB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05601___rapB
# 2: RBAM_033860___rapB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1151
# Identity:     869/1151 (75.5%)
# Similarity:   869/1151 (75.5%)
# Gaps:          37/1151 ( 3.2%)
# Score: 3194.5
# 
#
#=======================================

BSNT_05601___      1 ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAA     50
                     |||.||||.||||||||.||||||||||||||.|||||.||.|||||.||
RBAM_033860__      1 ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAA     50

BSNT_05601___     51 GTGGTATAAGCACATTTTAGCATTTCAAGTGGCTGATGCCGTAAAGCTGA    100
                     .|||||.||||||||||||||.|||||||.||||||||||.|||||||||
RBAM_033860__     51 ATGGTACAAGCACATTTTAGCGTTTCAAGCGGCTGATGCCATAAAGCTGA    100

BSNT_05601___    101 AGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTT    150
                     |.||.|||||||||...|||||..|||..|||||.||.||.||||||||.
RBAM_033860__    101 AAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTG    150

BSNT_05601___    151 CTCCTGTATTATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTA    200
                     ||..|.|||||||||||||||||||||||.||.||.||||||||.|||||
RBAM_033860__    151 CTGTTATATTATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTA    200

BSNT_05601___    201 TGTAAAGCCTGACCTGCA-CGAGGAATCTCAGCTTCAATATCGTGAATTG    249
                     .||.|||||.|| .|||| |||..||||.|||.||||.||..|.||..||
RBAM_033860__    201 CGTCAAGCCGGA-ATGCACCGAACAATCACAGATTCAGTACAGCGAGCTG    249

BSNT_05601___    250 ATCAAA--ACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAG    297
                       ||||  |||.|.|||||||   .|||||||||.||.|||.|.||||||
RBAM_033860__    250 --CAAAAGACGATCGAAAGCA---CGGACAGCATATCGGGACTGTCTGAG    294

BSNT_05601___    298 TATTATTTTCACTTGTTTAGAGGAATGTACGAATTTGAACAGAACAATTA    347
                     ||||||||.||.|||||.|||||.|||||.|||||.||.||.||.||.||
RBAM_033860__    295 TATTATTTCCATTTGTTCAGAGGGATGTATGAATTCGATCACAATAACTA    344

BSNT_05601___    348 CATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTG    397
                     ..|..|||||||.||.|||||.||||||||.||.||..|.|||.|.||||
RBAM_033860__    345 TGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTG    394

BSNT_05601___    398 TAGAAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTC    447
                     |.||.|||||.||.||.||.||||||||.|||||.||..||.|.|||||.
RBAM_033860__    395 TCGAGGATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTG    444

BSNT_05601___    448 TTTTATATTATGAAGCAGACGCACTTTTCCATGAACCACGCTGTACAGGC    497
                     ||||||.|.|||||||||||.||.|||||||||||.||||...|.|||||
RBAM_033860__    445 TTTTATGTCATGAAGCAGACTCATTTTTCCATGAATCACGGGATTCAGGC    494

BSNT_05601___    498 GCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAAT    547
                     ||||||.|||||||.|...||||||||.||.|||||..|.||||||||||
RBAM_033860__    495 GCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAAT    544

BSNT_05601___    548 GCCATTTCGTCATATCAGGAAACTACATAGACTACAGAAATTATGAAAAA    597
                     |||||||||||||.||||||||||||||.||||.||.|||.||.||.|||
RBAM_033860__    545 GCCATTTCGTCATCTCAGGAAACTACATCGACTGCAAAAACTACGACAAA    594

BSNT_05601___    598 GCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGGAAGGACA    647
                     ||||||||.||||||||.||.||....||||||.||||..|.||||||||
RBAM_033860__    595 GCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAGGACA    644

BSNT_05601___    648 GCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATG    697
                     ||||||..|||||||.||..|.|||||.|||.|.||||||||.|||..||
RBAM_033860__    645 GCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTG    694

BSNT_05601___    698 ACAAGGGGGAGCTGGATCAGGCCGCCGAATACTTTGAAAAAGCGCTTACT    747
                     |.|||.|.||.||||||.|.||.|||...||||||..|||||||.||.|.
RBAM_033860__    695 AAAAGCGCGATCTGGATGAAGCGGCCCGGTACTTTAGAAAAGCGGTTCCC    744

BSNT_05601___    748 GTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCT    797
                     ||.||.||.||..|||||||.|||||||||||.||.|||||.||||||.|
RBAM_033860__    745 GTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTT    794

BSNT_05601___    798 GACTCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTAC-    846
                     .||.|.|...|||||||.....||.|||..|.||||.||    |..||| 
RBAM_033860__    795 AACGCACACCCTTTTCAGGCTTCATGATGACCAAGCGGC----CCTTACC    840

BSNT_05601___    847 ---TATGAAAAAGGGAT--TGCCATTGCCCAAAAACGAAACGACTTC--T    889
                        |||||||.||||.|  ||  ||.||..||.||||...|||  ||  |
RBAM_033860__    841 TATTATGAAAGAGGGGTCATG--ATCGCGAAAGAACGGGGCGA--TCGAT    886

BSNT_05601___    890 TCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTC    939
                     |||||.|.|..||.|||||.|||.|.||.||..|.|||.||||.||..||
RBAM_033860__    887 TCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTC    936

BSNT_05601___    940 AATTTGGATATGATTCAAGAAGTATTTGATTATATGGAAGAAAAGGGCCT    989
                     |||.|||||.|.||.||.|||||.|||||.||||||.|.|||||....||
RBAM_033860__    937 AATATGGATTTAATCCATGAAGTGTTTGACTATATGAATGAAAAATCGCT    986

BSNT_05601___    990 GTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTC   1039
                     ||||||.|||||||||||.||.||.||.||.||.|||..|||   ||  |
RBAM_033860__    987 GTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTA---CA--C   1031

BSNT_05601___   1040 A-----TCACGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGG   1084
                     |     .||.||.||||||||||||||||.|||||||||||||||||||.
RBAM_033860__   1032 AAGCGCACATGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGA   1081

BSNT_05601___   1085 TCAGCATGAGAGAGATGATTC-AAAGGAACGATTGTTTATATGAAGTATG   1133
                     |..||||||||||.|..|||| |||.|||| |.||||||||.||..|||.
RBAM_033860__   1082 TTCGCATGAGAGAAAACATTCAAAAAGAAC-AGTGTTTATACGATATATA   1130

BSNT_05601___   1134 A   1134
                     |
RBAM_033860__   1131 A   1131


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