Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05620 and RBAM_033960

See Amino acid alignment / Visit BSNT_05620 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:07
# Commandline: needle
#    -asequence dna-align/BSNT_05620___atpC.1.9828.seq
#    -bsequence dna-align/RBAM_033960___atpC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05620___atpC-RBAM_033960___atpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05620___atpC-RBAM_033960___atpC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05620___atpC
# 2: RBAM_033960___atpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 407
# Identity:     349/407 (85.7%)
# Similarity:   349/407 (85.7%)
# Gaps:          16/407 ( 3.9%)
# Score: 1531.0
# 
#
#=======================================

BSNT_05620___      1 ATGAAGACCGTTAAAGTCAATATCGTTACTCCCGACGGCCCAGTATACGA     50
                     |||||||||||||||||||||||||||||||||||||||||||||||.||
RBAM_033960__      1 ATGAAGACCGTTAAAGTCAATATCGTTACTCCCGACGGCCCAGTATATGA     50

BSNT_05620___     51 TGCGGATATCGAAATGGTGAGTGTGAGAGCCGAAAGCGGCGATCTCGGTA    100
                     |||.|||||.||||||||.|||||.||||||||.|||||.||||||||||
RBAM_033960__     51 TGCTGATATTGAAATGGTAAGTGTAAGAGCCGAGAGCGGTGATCTCGGTA    100

BSNT_05620___    101 TTTTGCCAGGCCATATTCCAACCGTGGCTCCTCTTAAAATCGGCGCTGTC    150
                     |.|||||.|||||||||||.|||||||||||.||||||||||||||||||
RBAM_033960__    101 TCTTGCCTGGCCATATTCCGACCGTGGCTCCGCTTAAAATCGGCGCTGTC    150

BSNT_05620___    151 CGTCTGAAAAAAGACGGGCAGACTGAAATGGTTGCCGTCAGCGGCGGATT    200
                     ||.||.|||||||||||.|||||.|||.|||..||.||||||||||||||
RBAM_033960__    151 CGCCTTAAAAAAGACGGACAGACCGAATTGGCGGCTGTCAGCGGCGGATT    200

BSNT_05620___    201 TGTCGAAGTCCGTCCTGATCAGGTCACCATCCTTGCCCAGGCTGCCGAGA    250
                     |.|.|||||||||||||||||||||||.||||||||.||.||.||.||.|
RBAM_033960__    201 TTTAGAAGTCCGTCCTGATCAGGTCACTATCCTTGCACAAGCCGCTGAAA    250

BSNT_05620___    251 CAGCGGAAGGCATCGATAAAGAGCGCGCTGAAGCTGC----ACGCCAGCG    296
                     ||||||||.||||.||||||||||||||....|||||    |    ||||
RBAM_033960__    251 CAGCGGAAAGCATTGATAAAGAGCGCGCCCTTGCTGCGAAAA----AGCG    296

BSNT_05620___    297 GGCGCAGGAGCGTTTGAATTCTCA----ATCAGATGATACTGACATTCGT    342
                     ||||.|.||.||||||||    ||    ||||||||||||||||||||||
RBAM_033960__    297 GGCGGAAGACCGTTTGAA----CAAACGATCAGATGATACTGACATTCGT    342

BSNT_05620___    343 CGGGCTGAGCTTGCGTTACAGCGGGCTTTGAACAGATTGGATGTAGCAGG    392
                     |||||||||||||||.|||||||||||.|.||||||||||||||.|||||
RBAM_033960__    343 CGGGCTGAGCTTGCGCTACAGCGGGCTGTAAACAGATTGGATGTTGCAGG    392

BSNT_05620___    393 GAAATAA    399
                     .||.|||
RBAM_033960__    393 AAACTAA    399


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