Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05623 and RBAM_033980

See Amino acid alignment / Visit BSNT_05623 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:07
# Commandline: needle
#    -asequence dna-align/BSNT_05623___atpG.1.9828.seq
#    -bsequence dna-align/RBAM_033980___atpG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05623___atpG-RBAM_033980___atpG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05623___atpG-RBAM_033980___atpG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05623___atpG
# 2: RBAM_033980___atpG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 874
# Identity:     720/874 (82.4%)
# Similarity:   720/874 (82.4%)
# Gaps:          20/874 ( 2.3%)
# Score: 2978.0
# 
#
#=======================================

BSNT_05623___      1 TTGGCCTCATTACGCGATATTAAGTCAAGGATCACGTCAACGAAAAAAAC     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_033980__      1 TTGGCCTCATTACGCGATATTAAGTCAAGGATCACGTCAACGAAAAAAAC     50

BSNT_05623___     51 AAGTCAGATTACAAAAGCCATGCAGATGGTATCTGCGGCTAAGCTGAATC    100
                     |||.|||||||||||||||||||||||||||||.||.||.||||||||.|
RBAM_033980__     51 AAGCCAGATTACAAAAGCCATGCAGATGGTATCCGCTGCGAAGCTGAACC    100

BSNT_05623___    101 GTGCTGAAAACAATGCAAAATCATTTGTGCCATATATGGATAAAATCCAA    150
                     ||||.||||.|||.||.||.|||||||..||.|||||||||||.|||||.
RBAM_033980__    101 GTGCGGAAACCAACGCGAAGTCATTTGCTCCGTATATGGATAAGATCCAG    150

BSNT_05623___    151 GAGGTTGTGTCAAACGTCGGAAGAGTTTCCGGC------AACGTAAAGCA    194
                     ||||||||||..||||||||||.|      |||      ||||..||.||
RBAM_033980__    151 GAGGTTGTGTTTAACGTCGGAAAA------GGCGCGAAAAACGCGAAACA    194

BSNT_05623___    195 TCCGATGCT--TCTCAGCAGAGAAGTGAAAAAAACGGCATACCTTGTCAT    242
                     .||||||||  |||||  ||||||||||||||.|||||.||.||.|||||
RBAM_033980__    195 CCCGATGCTTGTCTCA--AGAGAAGTGAAAAAGACGGCGTATCTCGTCAT    242

BSNT_05623___    243 TACGTCTGACCGCGGTCTTGCCGGCGCTTTTAACAGTTCGGTTTTACGGA    292
                     |||||||||||||||.|||||.||.||.|||||||||||||||||.||.|
RBAM_033980__    243 TACGTCTGACCGCGGGCTTGCGGGTGCGTTTAACAGTTCGGTTTTGCGAA    292

BSNT_05623___    293 ATGCTTATCAGGCCATGCAAGAACGTCATCAGTCTAAGGATGAGTATGCG    342
                     |.|||||.|...||||.||||||||.|||||||||||.|||||.||..||
RBAM_033980__    293 ACGCTTACCGCACCATTCAAGAACGCCATCAGTCTAAAGATGAATACACG    342

BSNT_05623___    343 GTGATTGCCATCGGAAGAGTGGGCCGTGATTTCTTTAAGAAACGGGAGAT    392
                     ||||||||.|||||.|||||.|||||.||||||||.||.||||||||.||
RBAM_033980__    343 GTGATTGCAATCGGCAGAGTCGGCCGCGATTTCTTCAAAAAACGGGAAAT    392

BSNT_05623___    393 TCCGATCATTTCCGAGTTAACAGGACTTGGGGATGAAGTGACGTTTACAG    442
                     .|||||..|.||.||||||...||.|||||.||.||.||.||.|||.|..
RBAM_033980__    393 GCCGATTTTGTCTGAGTTAGTGGGGCTTGGCGACGAGGTCACTTTTGCTC    442

BSNT_05623___    443 AAATTAAAGATCTTG-CCCGTCAAACGATCCAAATGTTTATAGACGGTGC    491
                     |.||||||||| ||| |||||||.|||.|.|||||||||||.|||||.||
RBAM_033980__    443 AGATTAAAGAT-TTGACCCGTCAGACGGTTCAAATGTTTATCGACGGCGC    491

BSNT_05623___    492 GTTTGATGAATTGCACCTTGTTTATAACCATTTTGTCAGCGCCATTACTC    541
                     .|||||||||.||||..|.||.|||||||||||.|||||.||.|||.|.|
RBAM_033980__    492 TTTTGATGAACTGCATTTGGTGTATAACCATTTCGTCAGTGCGATTTCAC    541

BSNT_05623___    542 AAGAAGTAACGGAGAAAAAACTTCTGCCGTTATCTGATTTGGGCAGCG-G    590
                     |.|||||.||||||||||||.|.|||||.|||.|.|||||.|| |.|| |
RBAM_033980__    542 AGGAAGTGACGGAGAAAAAAGTGCTGCCTTTAACGGATTTCGG-AACGAG    590

BSNT_05623___    591 CGGCGGAAAAAGAACGGCGTCTTATGAATTTGAACCATCTGAAGAGGAGG    640
                     ||||||.||..|.||.||.|||||.||.||.|||||...||||||.||||
RBAM_033980__    591 CGGCGGGAAGCGTACAGCTTCTTACGAGTTCGAACCGGATGAAGAAGAGG    640

BSNT_05623___    641 TTCTGGAGGTTTTGCTTCCTCAATATGCAGAAAGCTTAATCTTCGGTGCG    690
                     |.||.||.||..||||||||||||||||.|||||||||||.|.|||.|||
RBAM_033980__    641 TGCTCGAAGTGCTGCTTCCTCAATATGCGGAAAGCTTAATTTACGGCGCG    690

BSNT_05623___    691 CTTCTTGACAGTAAAGCAAGTGAGCACGCTGCAAGAATGACGGCGATGAA    740
                     |||||||||||||||||||||||.||||||||.||||||||.||.|||||
RBAM_033980__    691 CTTCTTGACAGTAAAGCAAGTGAACACGCTGCGAGAATGACAGCAATGAA    740

BSNT_05623___    741 AAATGCGACAGACAACGCGAAGGAACTTATCGATTCACTTTCGCTTTCTT    790
                     |||||||||.||.||.|||||.|||||.||.|||||||||||||||||.|
RBAM_033980__    741 AAATGCGACTGATAATGCGAAAGAACTCATTGATTCACTTTCGCTTTCAT    790

BSNT_05623___    791 ACAACCGCGCTCGCCAAGCAGCCATCACACAAGAAATTACGGAAATTGTC    840
                     |.||||||||.||.|||||.||.||.||||||||||||||.|||||||||
RBAM_033980__    791 ATAACCGCGCGCGTCAAGCGGCGATTACACAAGAAATTACCGAAATTGTC    840

BSNT_05623___    841 GGCGGAGCAGCCGCTTTAGAATAG    864
                     |||||.||||||||||||||||||
RBAM_033980__    841 GGCGGTGCAGCCGCTTTAGAATAG    864


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05623 and RBAM_033980

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
