Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05682 and RBAM_034340

See Amino acid alignment / Visit BSNT_05682 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:11
# Commandline: needle
#    -asequence dna-align/BSNT_05682___ywjE.1.9828.seq
#    -bsequence dna-align/RBAM_034340___ywjE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05682___ywjE-RBAM_034340___ywjE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05682___ywjE-RBAM_034340___ywjE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05682___ywjE
# 2: RBAM_034340___ywjE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1267
# Identity:     897/1267 (70.8%)
# Similarity:   897/1267 (70.8%)
# Gaps:         137/1267 (10.8%)
# Score: 2981.0
# 
#
#=======================================

BSNT_05682___      1 ATGAAAGT-ATTTATCGTGATTATGATCATTGTCGTTATTTTCTTTGC-C     48
                     |||||.|| |||| |.|||.|..|..|||||.|..|.||.||..|.|| |
RBAM_034340__      1 ATGAAGGTCATTT-TTGTGTTGCTTGTCATTTTTATCATATTAATCGCAC     49

BSNT_05682___     49 TTGATTCTGCTTGATAT-CTTCATGGGCCGTGCCGGATACAGAAAAAAGG     97
                     || ||.||||||||||| ||.| |.|||||.||.|..||||.||||.|||
RBAM_034340__     50 TT-ATGCTGCTTGATATGCTGC-TTGGCCGGGCGGCGTACAAAAAACAGG     97

BSNT_05682___     98 CGTACGAGCCTGTTTTT---TCAAAAAAGAAGAGTGACATCGAATTGATC    144
                     ||||.|||||.||||||   .|.|||   ||||||||.|||..|.|.||.
RBAM_034340__     98 CGTATGAGCCCGTTTTTGACCCGAAA---AAGAGTGATATCACACTCATT    144

BSNT_05682___    145 CACTGCGGC-GCTGATCTCGTTGAGCGGATGATGAAG---GATATTCGCC    190
                     ||||||||| || ||.|   |||.||||..|||||.|   |||||.||||
RBAM_034340__    145 CACTGCGGCAGC-GAGC---TTGTGCGGCAGATGACGGCCGATATCCGCC    190

BSNT_05682___    191 AGGCCGCCTCTTCTGTTCACATGATGTTTTTTATTATGAAAAATGATGAG    240
                     |.||||.|||||||.||||.||||||||||||||||||||.||.||..|.
RBAM_034340__    191 AAGCCGTCTCTTCTATTCATATGATGTTTTTTATTATGAAGAACGACCAA    240

BSNT_05682___    241 GTCAGCCACAATATGTATACCTTGCTGAAAACAAAAGCCCAAGCTGGCGT    290
                     ||||||||..|.||||.|...||..|||||..|||.|||||.||.|||||
RBAM_034340__    241 GTCAGCCATGAGATGTTTGATTTATTGAAAGAAAAGGCCCAGGCCGGCGT    290

BSNT_05682___    291 ATCCGTTTATTTGCTTCTGGATTGGGCGGGCTGCCGGGCAATTAAAAAAA    340
                     .|||||.|||.||||.||.||||||||||||.||| |.|||.|.||||| 
RBAM_034340__    291 CTCCGTATATCTGCTGCTCGATTGGGCGGGCAGCC-GCCAAGTGAAAAA-    338

BSNT_05682___    341 CGGCGC------TGCAGACGATGAAAAATGCCGGCGTCCATGTCCATGT-    383
                         ||      |.||.|||||||||||.||||||||.||.||.|||.| 
RBAM_034340__    339 ----GCCTTCCATTCAAACGATGAAAAAAGCCGGCGTTCACGTTCATTTT    384

BSNT_05682___    384 ---GATGAATCGTCCCCGTTTTCCTTTTTTCTTTTTTCA--CATGCAAAA    428
                        .||.||.||.|    .|||||.|||.| ||||||||  | |||||||
RBAM_034340__    385 CTAAATAAACCGGC----ATTTCCGTTTCT-TTTTTTCAGGC-TGCAAAA    428

BSNT_05682___    429 ACGGAATCACCGGAAGATTACGGTGATAGACGGAAAAATCGGTTATATCG    478
                     |||||||||||||||..|.||.||.||.|||||.||||||||.|||.|||
RBAM_034340__    429 ACGGAATCACCGGAAAGTGACCGTCATTGACGGCAAAATCGGCTATGTCG    478

BSNT_05682___    479 GCGGGTTTAACATCGCCGAAGAATATCTTGGAAAGAAGGCGAAGTTCGGC    528
                     ||||.|||||.|||||.|||||.||.||.||.||.||.|||||||||||.
RBAM_034340__    479 GCGGTTTTAATATCGCTGAAGAGTACCTCGGCAAAAAAGCGAAGTTCGGA    528

BSNT_05682___    529 AATTGGGAGGATTATCATCTGCGCATGATGGGAGAAGGCGTAC--ATGAT    576
                     ||.||||||||||||||.|||||.||||..||.||||||  ||  ..|||
RBAM_034340__    529 AACTGGGAGGATTATCACCTGCGGATGACCGGCGAAGGC--ACGGCGGAT    576

BSNT_05682___    577 CTTCAAACGCTTTTTGCTTCT----GATCTAAAACGAAATACCGGAATCG    622
                     |||||.||.|||||||    |    |||||.||||||||.|||||||..|
RBAM_034340__    577 CTTCAGACTCTTTTTG----TAAGCGATCTGAAACGAAACACCGGAAAAG    622

BSNT_05682___    623 AACTGGGTT---CGGATGTTTGGCCAAAGCTTCAGC--AAGGGGCTATTT    667
                     .||..||.|   |.||.||||..||  .||.|.|.|  |||||..|||.|
RBAM_034340__    623 CACCCGGATCACCCGAGGTTTATCC--CGCATTATCCGAAGGGAATATCT    670

BSNT_05682___    668 CTCACAAGATATATGCGACCGACGGTTATTCCCTTGAA-AACATATACTT    716
                     ||||.|.||.|||||||.|.|||||||.|||.|||||| ..||| ||  |
RBAM_034340__    671 CTCATAGGACATATGCGTCTGACGGTTTTTCGCTTGAATCGCAT-TA--T    717

BSNT_05682___    717 GGCCAACATTGCA-----CAAGCG-----AAGAATCGCCTTA-CGGTTTG    755
                     |   ||.|.||||     .|.|||     ||.|||  |.||| ||    |
RBAM_034340__    718 G---AAAACTGCATCCGTAAGGCGGAGAAAAAAAT--CATTATCG----G    758

BSNT_05682___    756 CACGCCTTATTACATTCC-ATCAAAACCGCTTCAAGAGGCCCTTATT--A    802
                     ||||||||||||..|.|| |.||||| .||||||.||.||.||||||  |
RBAM_034340__    759 CACGCCTTATTATGTACCGAGCAAAA-AGCTTCAGGAAGCGCTTATTTCA    807

BSNT_05682___    803 AC--GCAAGAAAAAACGGCGT-------ATCCGTGAGAATCATTGTACCG    843
                     .|  || .|||||   |||||       |||       .|.||.||.|||
RBAM_034340__    808 GCCTGC-CGAAAA---GGCGTCAAAGTCATC-------TTGATCGTGCCG    846

BSNT_05682___    844 ATGAAATCAGACCATCCGCTGGTACGAGAAGCAGCTTTTACGTATTATTC    893
                     |||||.||||||||.|||||.||.||.|||.||||||||||.||||||.|
RBAM_034340__    847 ATGAAGTCAGACCACCCGCTCGTTCGGGAAACAGCTTTTACCTATTATCC    896

BSNT_05682___    894 GGAGCTCTTGGATGCCGGCTGTCTTATTTATCGTTATTATCAAGGATTTT    943
                     .|||||..||.|.||||||||.||.||.|||||.|||||||||||.||||
RBAM_034340__    897 CGAGCTTCTGAAGGCCGGCTGCCTCATCTATCGGTATTATCAAGGCTTTT    946

BSNT_05682___    944 ATCATGTAAAAGCCCTCATCATAGACGACCATCTCAGCATTATCGGAACA    993
                     |||||||.|||||..||||.||.||.||||...|||||||||||||.|| 
RBAM_034340__    947 ATCATGTCAAAGCTTTCATTATTGATGACCGCATCAGCATTATCGGCAC-    995

BSNT_05682___    994 GCC-AACTTCGATAAACGAAGCCTGTTTTTAAATGAAGAGGTGAATGTCG   1042
                     ||| ||.||.||||||||.||.|||||.|..||||||||||||||||||.
RBAM_034340__    996 GCCGAATTTTGATAAACGGAGTCTGTTCTGGAATGAAGAGGTGAATGTCA   1045

BSNT_05682___   1043 AAATTGATGACGAAGCGTTTACAAGTGAAGT-CTATGCCACGATTGAGGA   1091
                     ..|||.||||.|||||.|||||||..||||| || |.|.||.||..||.|
RBAM_034340__   1046 TCATTCATGATGAAGCCTTTACAAAGGAAGTGCT-TTCAACCATAAAGCA   1094

BSNT_05682___   1092 GGATAT-GAAAAAGTCGGAGCGGCTGACGATGGAGGATTTCAGCA-----   1135
                     |||.|| |||||| ||.||||..||.||        |||  ||.|     
RBAM_034340__   1095 GGACATCGAAAAA-TCCGAGCTTCTCAC--------ATT--AGAAAAAGT   1133

BSNT_05682___   1136 -----AGCGCACATTCAGGCAGCGCCCGGCGGAATGGCTCGGCAGGGCAT   1180
                          |||||.|..||||.||||..||.||.||||||||.||.|.|||..
RBAM_034340__   1134 GAAACAGCGCTCCGTCAGACAGCTTCCTGCAGAATGGCTGGGAAAGGCCA   1183

BSNT_05682___   1181 TATCTTATTTCTTATAA   1197
                     |||||||.||.||||||
RBAM_034340__   1184 TATCTTACTTTTTATAA   1200


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