Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05684 and RBAM_034350

See Amino acid alignment / Visit BSNT_05684 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:11
# Commandline: needle
#    -asequence dna-align/BSNT_05684___uvsE.1.9828.seq
#    -bsequence dna-align/RBAM_034350___uvsE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05684___uvsE-RBAM_034350___uvsE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05684___uvsE-RBAM_034350___uvsE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05684___uvsE
# 2: RBAM_034350___uvsE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 985
# Identity:     731/985 (74.2%)
# Similarity:   731/985 (74.2%)
# Gaps:          44/985 ( 4.5%)
# Score: 2593.5
# 
#
#=======================================

BSNT_05684___      1 ATGATTTTCAGATTCGGGTTCGTTTCAAATGCGATGAGCCTTTGGGATGC     50
                     |||.|.|||||||||||.|||||..||||.||.|||.||||||||||.||
RBAM_034350__      1 ATGCTGTTCAGATTCGGATTCGTCGCAAACGCCATGTGCCTTTGGGACGC     50

BSNT_05684___     51 GTCTCCCGCTAAAACATTGACATTCGCGCGTTATTCAAAGCTTTCAAAGA    100
                     |||.|||||.|||||.||.||||..|||||.|||.|.||||||||....|
RBAM_034350__     51 GTCCCCCGCCAAAACCTTAACATATGCGCGCTATACCAAGCTTTCCCGCA    100

BSNT_05684___    101 CTGAAAGAAAAGAAGCGCTTCTGACTGTGACAAAAGCCAAT-TTGCACAA    149
                     .|||..|.|||||.||.||.||..|||||||.|||||.||| ||.| |||
RBAM_034350__    101 GTGAGCGGAAAGACGCCCTGCTTTCTGTGACGAAAGCAAATCTTAC-CAA    149

BSNT_05684___    150 TACGATGAGAACCCTTCACTATATCATCGGACACGGCATCCCTTTGTACC    199
                     |||..||.|.|||.|.||||||.|..||||.|||||||||||..|||||.
RBAM_034350__    150 TACACTGCGCACCATCCACTATGTGGTCGGCCACGGCATCCCGCTGTACA    199

BSNT_05684___    200 GTTTTTCCAGTTCGATTGTGCCGCTGGCTACGCATCCCGACGTGATGTGG    249
                     |.||.||.||.||||||||||||||.||.||.|||||.||.|||.|||||
RBAM_034350__    200 GGTTCTCAAGCTCGATTGTGCCGCTCGCCACCCATCCGGATGTGCTGTGG    249

BSNT_05684___    250 GATTTTGTAACACCGTTTCAAAAAGAGTTTCGGGAGATTGGAGAGCTTGT    299
                     ||||||||.||.|||||||...|.||||||.|.|||||.||.|.|||.||
RBAM_034350__    250 GATTTTGTCACGCCGTTTCGCCAGGAGTTTTGTGAGATCGGCGGGCTGGT    299

BSNT_05684___    300 TAAAACCCATCAACTGCGAACAAGCTTTCATCCAAATCAATTCACTCTGT    349
                     .|.||...||.|.||..||||.|||||||||||.||.||||||||.||.|
RBAM_034350__    300 CAGAAAATATGATCTCAGAACGAGCTTTCATCCGAACCAATTCACGCTTT    349

BSNT_05684___    350 TTACGAGCCCGA---AGGA-AT--CCGTCACAAAAAATGCGGTAACCGAT    393
                     ||||.|||||||   |||| ||  |||      .|||||||||.|..|||
RBAM_034350__    350 TTACAAGCCCGAAACAGGAGATTACCG------CAAATGCGGTCAAGGAT    393

BSNT_05684___    394 ATGGCGTATCACTACCGCATGCTTGAAGCCATGGGCATTGCTGATCGCTC    443
                     |||||.|||||.||...||||||.||.||.|||||.||.||..|.||.||
RBAM_034350__    394 ATGGCCTATCATTATGACATGCTGGACGCAATGGGTATCGCGAACCGTTC    443

BSNT_05684___    444 CGTTATCAACATTCATATTGGCGGCGCTTACGG----AAATAAAGACACC    489
                     |||.||||||||.|||.|.||.|||||||||||    |||.||||    |
RBAM_034350__    444 CGTCATCAACATCCATGTCGGAGGCGCTTACGGTGACAAACAAAG----C    489

BSNT_05684___    490 GCCACTGCACAATTTCATC-AAAATATAAAACAGCTGCCGCAGGAGATCA    538
                     | |.||...|..||||..| ..|||.|.|||.|.||.||..|.|..||||
RBAM_034350__    490 G-CGCTTGGCCGTTTCCGCGTGAATCTGAAAGAACTTCCCGATGTCATCA    538

BSNT_05684___    539 AAGAGCGGATGACACTTGAAAATGATGATAAAACATATACAACGGAAGAA    588
                     ||.||||||||||..|.|||||.|||||||||||||||||..|.||.|||
RBAM_034350__    539 AACAGCGGATGACTTTAGAAAACGATGATAAAACATATACGTCCGAGGAA    588

BSNT_05684___    589 ACGCTTCAG-GTCTGTGAGCAGGAGGATGTTCCGTTTGTCTTTGACTTTC    637
                     ||.| |||| ||.|||||.||.||.|...||||||||||.|||||.|.||
RBAM_034350__    589 ACAC-TCAGTGTATGTGAACAAGAAGGCATTCCGTTTGTGTTTGATTATC    637

BSNT_05684___    638 ATCATTTTTACGCCAATCCAGA-CGATCACGCCGACCTGAATGTAG----    682
                     |.||||||||||||||||| || ||||.||||.|      ||.|||    
RBAM_034350__    638 ACCATTTTTACGCCAATCC-GACCGATGACGCTG------ATTTAGATGA    680

BSNT_05684___    683 CA--CTGCCCCGCATGATCAAAACGTGGGAGCGGATCGGCCTTCAGCCAA    730
                     ||  ||.||.||.|||||||||||.|||.|||||||||||.|..||||.|
RBAM_034350__    681 CATTCTTCCGCGGATGATCAAAACATGGCAGCGGATCGGCTTAAAGCCGA    730

BSNT_05684___    731 AGGTTCACTTGTCTTCCCCAAAATCGGAACAAGCGATACGCAGCCATGCC    780
                     ||||.||..|.||.||.||||||||.|||..|||.||||||||.|||||.
RBAM_034350__    731 AGGTCCATCTCTCCTCGCCAAAATCAGAATCAGCCATACGCAGTCATGCG    780

BSNT_05684___    781 GATTATGTTGACGCCAACTTTTTGCTGCCGCTGTTGGAACGCTTTAGGCA    830
                     ||.|||||.||.||.||.|||.|.||||||.||.||||.||.||.||.||
RBAM_034350__    781 GACTATGTGGATGCGAATTTTATTCTGCCGGTGCTGGAGCGGTTCAGACA    830

BSNT_05684___    831 ATGGGGAACGAATATTGATTTCATGATTGAAGC-AAAGCAGAAAGACAAG    879
                     |||||..|||.|.||.|||||.||||||||.|| |||| ||||||||..|
RBAM_034350__    831 ATGGGATACGGACATCGATTTTATGATTGAGGCGAAAG-AGAAAGACCGG    879

BSNT_05684___    880 GCGCTTCTCC-GCTTGATGGATGAATTAAGCTCCATCCGCGGTGTCAAAC    928
                     |||||.|||| |||.| |.||.|||||||||.||||||||||.|||||||
RBAM_034350__    880 GCGCTGCTCCGGCTCG-TCGAAGAATTAAGCGCCATCCGCGGAGTCAAAC    928

BSNT_05684___    929 GCCTCGGGGGCGGTGCGCTGCAATGGAAATCATAA    963
                     ||||.|.||||||.|.|||..|.|||||..|||||
RBAM_034350__    929 GCCTGGCGGGCGGAGTGCTAAAGTGGAAGGCATAA    963


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