Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05737 and RBAM_034640

See Amino acid alignment / Visit BSNT_05737 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:14
# Commandline: needle
#    -asequence dna-align/BSNT_05737.1.9828.seq
#    -bsequence dna-align/RBAM_034640.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05737-RBAM_034640.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05737-RBAM_034640.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05737
# 2: RBAM_034640
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 491
# Identity:     286/491 (58.2%)
# Similarity:   286/491 (58.2%)
# Gaps:         115/491 (23.4%)
# Score: 699.0
# 
#
#=======================================

BSNT_05737         1 ATGTAC---------GAAACCATTCGAGTCGGCGATTGGTTGATAAAAGC     41
                     ||||.|         ||||    |||    |||.| |||.|.||..||||
RBAM_034640        1 ATGTTCACCGTCTTTGAAA----TCG----GGCCA-TGGGTCATTGAAGC     41

BSNT_05737        42 CGACGTGGAAGAAACGAGAAAGCAATATGAGAAAGAT-ATAG-AGGATAT     89
                     .||.|.|||.|||||||||||.||||||  ||||.|| ||.| ..|||..
RBAM_034640       42 AGATGCGGAGGAAACGAGAAAACAATAT--GAAAAATCATGGCCTGATCC     89

BSNT_05737        90 GTGTGAATGCGGTAACTGTCTTAACTATTACGAGGCAGTGAATGAACTGC    139
                     .||.||.|||||.|.|||.|..||||.||.||||||.||||||...||.|
RBAM_034640       90 CTGCGATTGCGGGAGCTGCCGGAACTTTTCCGAGGCGGTGAATCTCCTTC    139

BSNT_05737       140 CAGTCCAAAAAGCACAAGTA----TTAGAAAGTTTCGGCCTCATTCCGTC    185
                     |.|.|.|.|||  ||||| |    |||...|||||.||    ||| ||||
RBAM_034640      140 CCGCCGAGAAA--ACAAG-ATTGTTTACGCAGTTTGGG----ATT-CGTC    181

BSNT_05737       186 CAAATG-----CACAGATATAAATT-----ATCATGG---GGTAAAAGAT    222
                     |...||     ||| |||     ||     |.|||||   ||.|||.|  
RBAM_034640      182 CGGCTGTCTGTCAC-GAT-----TTGGGGGAGCATGGAAAGGAAAACG--    223

BSNT_05737       223 CATCTGCACTTTTATATAGCG---AGTTATTTTATAGTAGGCCGTATTGT    269
                      ..|||||...||||   |||   ||.|||...||.||.|||.|..||..
RBAM_034640      224 -GCCTGCATCATTAT---GCGGGCAGCTATCCGATTGTCGGCAGGCTTAG    269

BSNT_05737       270 TGAAGGAAAACAAGAATGGAATCCGAAAAAGATTGATTTC---TCG---T    313
                     .|||||         .|||   |||||        .||||   |||   .
RBAM_034640      270 GGAAGG---------CTGG---CCGAA--------TTTTCATATCGAGAG    299

BSNT_05737       314 GGC-----ATA------TTTCATTTTCAGTGCCG----CAACACCAAATT    348
                     |||     |||      ||||.||||||.|||||    ||||    |.||
RBAM_034640      300 GGCGGGAGATATCCGCTTTTCGTTTTCATTGCCGAGTACAAC----ATTT    345

BSNT_05737       349 TACATTCCTAAGGGTTTTCCAAAACCAATTATTCAGCTCGATTGTGTTAC    398
                     |..||.||.|||||||||||..|.||.|||||.||.|||||.| |.|.||
RBAM_034640      346 TTTATACCGAAGGGTTTTCCTGACCCTATTATCCATCTCGACT-TTTCAC    394

BSNT_05737       399 GCTT-CTTCCATGGGTCATTGACCAACCATAC---GAATAA    435
                     .||| ||.||||||||..||||..|   |.||   ||.|||
RBAM_034640      395 TCTTGCTCCCATGGGTGCTTGAGGA---AGACGCGGATTAA    432


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