Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05738 and RBAM_034650

See Amino acid alignment / Visit BSNT_05738 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:14
# Commandline: needle
#    -asequence dna-align/BSNT_05738___ywhD.1.9828.seq
#    -bsequence dna-align/RBAM_034650___ywhD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05738___ywhD-RBAM_034650___ywhD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05738___ywhD-RBAM_034650___ywhD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05738___ywhD
# 2: RBAM_034650___ywhD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 519
# Identity:     435/519 (83.8%)
# Similarity:   435/519 (83.8%)
# Gaps:           0/519 ( 0.0%)
# Score: 1839.0
# 
#
#=======================================

BSNT_05738___      1 ATGGAAGAAAAAAAGAAAAAATCAATCGGGTTTAATATTATCAAAAGTGA     50
                     |||||||||||||||||.|||.|||||||.|||||||||||.||||||||
RBAM_034650__      1 ATGGAAGAAAAAAAGAAGAAAACAATCGGATTTAATATTATTAAAAGTGA     50

BSNT_05738___     51 TCCGACAGACGGACACGGCGGTTTTGGCGTAGGGGCACTCAGCCTTGATA    100
                     ||||||.||||||||.|||||||||||||..|||||.||.||||||||.|
RBAM_034650__     51 TCCGACCGACGGACATGGCGGTTTTGGCGCCGGGGCGCTGAGCCTTGACA    100

BSNT_05738___    101 ACATTTCTCCCGTATTCGTTGATGTAGAAGAAAAAGAAGCGTTCGTAGAC    150
                     |.||||||||.|||||.||.|||||.|||||.||.|||||.|||||.|||
RBAM_034650__    101 ATATTTCTCCGGTATTTGTCGATGTGGAAGAGAAGGAAGCCTTCGTTGAC    150

BSNT_05738___    151 ATCGGCGCCATGCATGCCCGCAGCACCGTTGAAAAAGGAATTAAATTTCT    200
                     |||||.|||||||||||||||||...||||||||||||.||.|||||.||
RBAM_034650__    151 ATCGGTGCCATGCATGCCCGCAGTGTCGTTGAAAAAGGCATCAAATTCCT    200

BSNT_05738___    201 CCCGAATAAAGAAGAAGTGCCGAACGGAAAACCATACTGGCTTGTGTGGG    250
                     .|||||.|||||.||||||||||||||||||||.||||||||.|||||||
RBAM_034650__    201 GCCGAACAAAGATGAAGTGCCGAACGGAAAACCGTACTGGCTCGTGTGGG    250

BSNT_05738___    251 TAACGATTGACAGAAAAGAAGAGGGGCCTTATTACGCTGGTGTGACAGCC    300
                     |.||.||.||||||||||||||.||.|||||||||||.||||||||.||.
RBAM_034650__    251 TCACCATCGACAGAAAAGAAGAAGGCCCTTATTACGCGGGTGTGACGGCT    300

BSNT_05738___    301 TGTGAAATGACGGTCGACAGAAGCATCAGAAGAGGCTACAAGTCGCTGCC    350
                     |||||||||||.||.||||||||.|||.|.||||||||.|||||..||||
RBAM_034650__    301 TGTGAAATGACCGTGGACAGAAGTATCCGCAGAGGCTATAAGTCATTGCC    350

BSNT_05738___    351 TGAGCATGTGAATTTGATGGATAAATCCATGAAACGGAAAATCATCGTTG    400
                     .||||||||||||||.|||||||||||.|||||.||....||.|||||.|
RBAM_034650__    351 GGAGCATGTGAATTTAATGGATAAATCAATGAAGCGCTGCATTATCGTGG    400

BSNT_05738___    401 ATAAAATGGACGACAGCTCGAAGCGTGTACTAGGCGAATTTCTGAAAAAG    450
                     |.||||||||||.||||||.||||..||.||.|..|||||||||.|.|||
RBAM_034650__    401 ACAAAATGGACGCCAGCTCAAAGCAGGTGCTTGCTGAATTTCTGCAGAAG    450

BSNT_05738___    451 CATGATCAGGGCCTATGGGACCGTTCCTCAGATGAGTTAAAAACGAGCCT    500
                     |||||.||.||.||.|||||.|||||.||.|||||.||.|||||..|.||
RBAM_034650__    451 CATGACCAAGGGCTCTGGGAACGTTCATCCGATGAATTGAAAACAGGACT    500

BSNT_05738___    501 GCTTCCGGAAAACAATTAA    519
                     ||||||||||.|.||.|||
RBAM_034650__    501 GCTTCCGGAAGAAAAATAA    519


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