Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05779 and RBAM_034970

See Amino acid alignment / Visit BSNT_05779 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:17
# Commandline: needle
#    -asequence dna-align/BSNT_05779___rocB.1.9828.seq
#    -bsequence dna-align/RBAM_034970___rocB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05779___rocB-RBAM_034970___rocB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05779___rocB-RBAM_034970___rocB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05779___rocB
# 2: RBAM_034970___rocB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1729
# Identity:    1279/1729 (74.0%)
# Similarity:  1279/1729 (74.0%)
# Gaps:          74/1729 ( 4.3%)
# Score: 4559.5
# 
#
#=======================================

BSNT_05779___      1 ATGCAGTATACA-AAAATCAGTCACATGAATCCGGCTGAAAGAGTGGAGG     49
                     ||   |||| || .|..||||..|.|||..|||||..||.|.|.|.||.|
RBAM_034970__      1 AT---GTAT-CAGCAGCTCAGCAAAATGCTTCCGGAGGAGAAAATAGAAG     46

BSNT_05779___     50 CGCTGACAGCATCTCTGGTCAGCC--TCAGCAGCGTGAACGGCACCGTTG     97
                     |..|.||...|||.|||||  |.|  |.|.||||.|.||||||||..|.|
RBAM_034970__     47 CCATTACGAAATCACTGGT--GGCGTTAAACAGCATCAACGGCACATTGG     94

BSNT_05779___     98 GAGAAGGGACAAAAGCAGATTTCATCAAAGAAGTGATCACGAGCTATCCT    147
                     |||||||.|.||||||.||.|..||||||||..||||||.|||||.|||.
RBAM_034970__     95 GAGAAGGAAAAAAAGCCGACTATATCAAAGATATGATCAAGAGCTTTCCC    144

BSNT_05779___    148 TATTTTCAGGAAAACCCCAGT--CATGTGTGGGAACAGGCCATTCCCAAT    195
                     ||.||||||||.||.||  ||  |||||||||||.|||||.|||||..|.
RBAM_034970__    145 TACTTTCAGGAGAATCC--GTCACATGTGTGGGAGCAGGCGATTCCTGAG    192

BSNT_05779___    196 GACCCATACAATCGCAAAAATATTTTTGCGTTTATTAAAGGACATGGAGA    245
                     |||||.|||...||||||||||||||.||.||||||.|.|||.|.||.||
RBAM_034970__    193 GACCCTTACGGCCGCAAAAATATTTTCGCATTTATTGAGGGAAACGGCGA    242

BSNT_05779___    246 AAGCCGTAATACAGTCATTTACCATGCCCATCTGGATACAGTTGGAATCG    295
                     |||||..|||||.||||||||.||.||.|||||.|||||.||.||.||||
RBAM_034970__    243 AAGCCTGAATACGGTCATTTATCACGCTCATCTTGATACGGTCGGCATCG    292

BSNT_05779___    296 AAGATTTCGGCCCTTTAAAGGATATCGCTTTTGATTGTGAGAAATTGGCC    345
                     |.|||||||||||||||||.||||||||||||||||..||.....|.||.
RBAM_034970__    293 AGGATTTCGGCCCTTTAAAAGATATCGCTTTTGATTCCGACCGTCTCGCG    342

BSNT_05779___    346 GAGTATTTC----AGCCGCTATGAGTTCGATCAGGATGTTCAGCGGGATG    391
                     ||.||||||    |    ||||||.||.||||.||||||.||||||||.|
RBAM_034970__    343 GAATATTTCTCAAA----CTATGAATTTGATCGGGATGTGCAGCGGGACG    388

BSNT_05779___    392 CCAAATCAGGCGATTGGATGTTCGGAAGAGGATCTGTTGATATGCAAAGC    441
                     ||...||||||||.||||||||||||||.||.||.|||||||||||.|||
RBAM_034970__    389 CCCGCTCAGGCGAGTGGATGTTCGGAAGGGGTTCGGTTGATATGCAGAGC    438

BSNT_05779___    442 GGCATCGCCGTGCATTTAGCCAATCTCCTGCATTTTTCGGAGAAC--CTT    489
                     ||.||.|||||.|||.|.||||||||.||.||.|||||  .||||  |..
RBAM_034970__    439 GGTATTGCCGTTCATCTCGCCAATCTGCTTCACTTTTC--TGAACGGCGC    486

BSNT_05779___    490 GAGACGTTGCCGGGAAATGTATTGTTTATGGCCAATCCCGATGAGGAGAG    539
                     ||...|.|||||||..||.|..||||.|||||.|||||.|||||.||.||
RBAM_034970__    487 GATCAGCTGCCGGGCCATATTCTGTTCATGGCAAATCCGGATGAAGAAAG    536

BSNT_05779___    540 CCAGCATTCGGGCATTCTCGCCAGCATTTCAGAGCTGAACCGGTTAAAAA    589
                     |||||||||.||||||.|..||||||||||.||..|.||.|||.|.|||.
RBAM_034970__    537 CCAGCATTCCGGCATTTTAACCAGCATTTCTGAATTAAAACGGCTGAAAC    586

BSNT_05779___    590 AAGAAAAACAGCTTCACTATTTGGCTGCTATTAATACAGATTTTATTACC    639
                     |||||||.|||||||..|||||.||.||.|||||||..||||||||.||.
RBAM_034970__    587 AAGAAAAGCAGCTTCGTTATTTAGCAGCGATTAATAACGATTTTATCACG    636

BSNT_05779___    640 CCGCTTTACGATGGTGATCA-GACAAGATATATCTATACCGGAGCCGCGG    688
                     |||||.||.||.||||| || ||||||.||.|||||.||.||.||.||.|
RBAM_034970__    637 CCGCTGTATGAGGGTGA-CACGACAAGGTACATCTACACGGGCGCGGCAG    685

BSNT_05779___    689 GAAAACTGCTGCCATGCTTTTACATTTACGGGCGTGAAGTCCATGTTGGC    738
                     |.||.||..||||.||||||...|||||||||||.||.||.|||||.||.
RBAM_034970__    686 GGAAGCTTTTGCCTTGCTTTGCGATTTACGGGCGGGAGGTGCATGTCGGT    735

BSNT_05779___    739 GATACACTGGCAGGGATTGACCCAAATTTCATTTCATCTGAAATCACAAG    788
                     |||||.|||.|.||.||.||.||.|||||.||..||||.||||||||.||
RBAM_034970__    736 GATACGCTGTCCGGCATCGATCCGAATTTGATCGCATCAGAAATCACCAG    785

BSNT_05779___    789 CCGTCTCCACAATAACATCCATCTGGCAGAAAAGGTTGAAGGGGAGTTGG    838
                     ..|..|.|||||.||.||.|||.||||.|||||..|||||||||||.|.|
RBAM_034970__    786 AAGAATTCACAACAATATTCATATGGCGGAAAACATTGAAGGGGAGCTTG    835

BSNT_05779___    839 TTCTGCCACCATCCTGTTTGTATCAGCGTGATAACAAGGAATCCTATAAT    888
                     |.||.||.||..||||..||||.||||||||.||.||||||.|.|||||.
RBAM_034970__    836 TGCTTCCGCCGACCTGCCTGTACCAGCGTGACAATAAGGAAGCGTATAAC    885

BSNT_05779___    889 GTGCAAACGGCTGTCAGCACCAGCT---TGTACTTCAATTGTTTTATTTA    935
                     |||||.||.||.|||||   |||||   |.||.||.||||.|||||||||
RBAM_034970__    886 GTGCAGACCGCCGTCAG---CAGCTATGTCTATTTTAATTATTTTATTTA    932

BSNT_05779___    936 TGAAAGAACAGCAAAAGAAATGATGGATTTGCTTATTGAAGTCACTGAGG    985
                     .||.|.|||.||.||||.|.|.||||||..|||.|.||..||..||||.|
RBAM_034970__    933 CGAGAAAACCGCCAAAGTAGTCATGGATCAGCTGACTGCCGTGGCTGACG    982

BSNT_05779___    986 AAGCATGCCAAGAGACAGAACAAAAATTATCAGATTATTATGAAGAATA-   1034
                     ||||.|||..|||||||||.|||||||||||.||||||||.||.||||| 
RBAM_034970__    983 AAGCCTGCAGAGAGACAGAGCAAAAATTATCTGATTATTACGACGAATAC   1032

BSNT_05779___   1035 --TGCAAAAAGAGCCAACCTGCCAAAGAAACATTTATCATGGGACATTCA   1082
                       ||   |.|||.|.|.||||||.||.|||.|..|.||||||.||.||||
RBAM_034970__   1033 TGTG---AGAGAACGAGCCTGCCGAAAAAAGAGATGTCATGGAACGTTCA   1079

BSNT_05779___   1083 AGTGTATAGCCTGGAGCAATATTTAGAAAA-GCTGAGAAACCGGGGGATA   1131
                     ||||||.||.|||||..|.||..| ||||| |||.||||.|||.||||||
RBAM_034970__   1080 AGTGTACAGTCTGGAAGATTACCT-GAAAAGGCTTAGAAGCCGCGGGATA   1128

BSNT_05779___   1132 GATCCCGAGCAGTGTATCGAGCAGACATTCAAAGCCAACGAGCACCTTGA   1181
                     ||.||.|..|||||||||||||||.||||.|||.|..|.||.||.|||||
RBAM_034970__   1129 GACCCTGCACAGTGTATCGAGCAGGCATTTAAAACATATGAACATCTTGA   1178

BSNT_05779___   1182 ACTTCGCATGAGATGCTTTCAGGCAATCGAAGAGCTTCAAAAGCTTGACC   1231
                     |||.||.||||||||||||.|.||..||||.||.||.|||||.||.||.|
RBAM_034970__   1179 ACTGCGGATGAGATGCTTTAAAGCCGTCGAGGAACTGCAAAAACTCGATC   1228

BSNT_05779___   1232 CCGATCAAGGCGCAAAAGTCATTCTATTTTACGCACCTCCTTACCTGCCA   1281
                     |.||.||.||.||.||.||||||.|.||.||.||.||.||||||||.||.
RBAM_034970__   1229 CTGAGCAGGGAGCCAAGGTCATTATTTTCTATGCGCCGCCTTACCTTCCG   1278

BSNT_05779___   1282 CATAACTATTTGAAAGAAGATAGCGCAAGAGATCAGCTTTTGCAGCATGT   1331
                     ||.||.|||.||||||||||.|||.||.|.||.|.|||||||||||||||
RBAM_034970__   1279 CACAATTATCTGAAAGAAGAGAGCTCACGGGACCGGCTTTTGCAGCATGT   1328

BSNT_05779___   1332 GATTAAAGAAGCGGCTGACAAAACCGCTGAATCGACAGGCGAAACATTTG   1381
                     .|||.|||||||||..||.|||||.||.|.|||.||.||.||||||||.|
RBAM_034970__   1329 CATTCAAGAAGCGGTCGATAAAACAGCGGCATCAACCGGAGAAACATTCG   1378

BSNT_05779___   1382 TCTTCAAAAAGTTTTTCCCCTACTTGGCAGACGGCAGTTTTTTATCACTG   1431
                     ||||.||||||||||||||.||.||.||.|||||.||.||||||||.|||
RBAM_034970__   1379 TCTTTAAAAAGTTTTTCCCTTATTTAGCGGACGGAAGCTTTTTATCGCTG   1428

BSNT_05779___   1432 CACGAAACCGATGGCGAAATTGA-TTCT-----TTTATCAGGAACTTTCC   1475
                     ||.|||||.||   |||   .|| .|||     ||||.|...||.|||||
RBAM_034970__   1429 CATGAAACAGA---CGA---GGAGGTCTCCGCCTTTACCGATAATTTTCC   1472

BSNT_05779___   1476 TGGGTGGAATATGATTGGGACCATTCCGTTCAAAGATAT-ACGCAAGCTG   1524
                     .||.|||.||.|.||.|||||.|||||.||.|||||.|| |.|.|| .||
RBAM_034970__   1473 GGGCTGGGATGTCATCGGGACGATTCCTTTTAAAGAAATCAGGGAA-TTG   1521

BSNT_05779___   1525 AATATTCCATCCATTAATATGGGTGTGTACGGAAAAGACGGCCATAAATG   1574
                     ||||||||.||..|.|||||.||.||.||||||||.||||||||||||||
RBAM_034970__   1522 AATATTCCGTCGGTCAATATAGGGGTATACGGAAAGGACGGCCATAAATG   1571

BSNT_05779___   1575 GACAGAACGAGTCTATAAACCGTACACATTTCATGTATTGCCTCTCCTCA   1624
                     |||.|||||.||.||.||.|||||||||||.|||||..||||....||||
RBAM_034970__   1572 GACGGAACGCGTGTACAAGCCGTACACATTCCATGTGCTGCCGGAGCTCA   1621

BSNT_05779___   1625 TACAGCAAACCACCGTTCACCTTTTGCAAAGCTACCGGAT--GACCATCA   1672
                     |.|||||.||.||..|.|||||||||||.||||||| |||  || ||| |
RBAM_034970__   1622 TTCAGCAGACGACAATGCACCTTTTGCACAGCTACC-GATTAGA-CAT-A   1668

BSNT_05779___   1673 CGGCAAAAGAACCAAAGGGGGAAGGATGA   1701
                     | |||.||             |.||.|||
RBAM_034970__   1669 C-GCACAA-------------ATGGCTGA   1683


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