Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00453 and RBAM_035010
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:12
# Commandline: needle
# -asequence dna-align/BSNT_00453___ycbL.1.9828.seq
# -bsequence dna-align/RBAM_035010.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00453___ycbL-RBAM_035010.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00453___ycbL-RBAM_035010.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00453___ycbL
# 2: RBAM_035010
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 773
# Identity: 457/773 (59.1%)
# Similarity: 457/773 (59.1%)
# Gaps: 154/773 (19.9%)
# Score: 1252.0
#
#
#=======================================
BSNT_00453___ 1 -----------ATGCAGCGCATATTGCTTGTAGAAGACGACCACTCAATC 39
| |||||..||||||||||||||||.|..||.
RBAM_035010 1 TTGGGTTACAAA--------ATATTAATTGTAGAAGACGACCAATTCATA 42
BSNT_00453___ 40 AGTGAAATGGTGGATCATTA--------TTTAACAAAAGAAGGCTTTGGA 81
||.||.|||| || .|||||.||||||||.||||.|
RBAM_035010 43 AGCGATATGG--------TAAGCGAAAGCTTAACGAAAGAAGGGTTTGAA 84
BSNT_00453___ 82 ATTGT----GCATGCTTTCGACGGAGAAGAGGGT---------------A 112
|| ||| |||||..|.||.|||||.|.| |
RBAM_035010 85 ---GTAACAGCA-GCTTTTAATGGTGAAGAAGCTTTAGACATATTGAACA 130
BSNT_00453___ 113 TCCGGCTGTTTCAGCAGGGTTCATACGATTTGGTCCTCCTT-GATATCAT 161
.||....||||.| |||| ||| ||| || |||.|.||
RBAM_035010 131 CCCAAAAGTTTGA----GGTT-ATA----TTG-------TTGGATTTAAT 164
BSNT_00453___ 162 GCTCCCGAAGCTGAACGGCATGGATTTTCTGAAAATCATCCGGGAAAAAA 211
|||.||||||.|..|.||.|||||.|.|.|.|.|||.||.||....||||
RBAM_035010 165 GCTTCCGAAGATAGATGGGATGGAATGTTTAAGAATGATTCGTTCCAAAA 214
BSNT_00453___ 212 GTAACGTT-CCGGTCTTAATGATTTCGGCAAAAGATGGAGATGTGGACAA 260
|||..||| |||.|||| ||.||.||.||||||||||.||||||.||.||
RBAM_035010 215 GTATGGTTCCCGTTCTT-ATCATGTCTGCAAAAGATGAAGATGTAGATAA 263
BSNT_00453___ 261 GGCATTGGGACTGGGCTTTGGGGCGGACGATTATATCGCCAAACCGTTTT 310
||||.|.||.||.|||.|.|||||.||.||||||||..|.|||||.||||
RBAM_035010 264 GGCACTTGGTCTCGGCCTCGGGGCTGATGATTATATTTCTAAACCTTTTT 313
BSNT_00453___ 311 CGATGATTGAGCTGACAGCCAGAGTAAAAGCCGCGATACGGCGGGCAACG 360
|.|||.|.|||.|.|.|||||||.|.|||||..|.||..|..|.|.||..
RBAM_035010 314 CTATGCTGGAGGTAATAGCCAGAATTAAAGCAACCATTAGAAGAGAAAGA 363
BSNT_00453___ 361 CAATATTCGGCAGAGGAGCCGGCTGT-----------GAATAAGGTGATC 399
||.||| |.||||...|||| |||.|| |||
RBAM_035010 364 CACTAT-------AAGAGCTCCCTGTCTTCAAAGGAAGAAAAA----ATC 402
BSNT_00453___ 400 CGGATTCACCAGCTTGCGATA---GATATA------GAC---AATG---T 434
|||.| .||| |||.|| ||| .||| |
RBAM_035010 403 ---ATTAA---------AATAGGTGATTTAAGTGTTGACCTGCATGGCTT 440
BSNT_00453___ 435 TTCCGTTTTGAAAAA---CGGAGAACCGCTCCAGCTGACGTCAACAGAAT 481
|||.||| ||||| |...|||..|.|..|.||.|||.|||.|||||
RBAM_035010 441 TTCTGTT---AAAAAATTCAATGAAAAGATTAATCTCACGGCAAAAGAAT 487
BSNT_00453___ 482 GGCAGCT------GCTGTGCTTATTCGCATCAAATTCTAAAAAAGTGTTT 525
...|..| .||.| ||||| ||.|||.||..|.||||.|.|
RBAM_035010 488 TTAATATTTTAAAACTCT--TTATT----TCTAATCCTTCACAAGTATAT 531
BSNT_00453___ 526 ACGAAAGAACAAATCTACCGTTCCGTTTGGAATGAAGAGTA-CTTTGATG 574
||.||....|||.|.||....|||||.|||.|.||.||||| |.|.|| |
RBAM_035010 532 ACTAAGTCTCAACTTTATAAATCCGTATGGGAAGATGAGTATCATGGA-G 580
BSNT_00453___ 575 ATCAGAACATCATTAACGTACATATGCGGCGGCTCAGAGAAAAGATTGAG 624
||.||||..|.|||||.||.|||||..|.|||||.|||||.||.||||||
RBAM_035010 581 ATGAGAATGTAATTAATGTTCATATTAGACGGCTTAGAGAGAAAATTGAG 630
BSNT_00453___ 625 GATGACCC--CTCCTCCCCTCAA--TATATTAAAACGCTATGGGGCATCG 670
||.||.|| |||.|| ||| ||.||.|||||..|.|||||.||||
RBAM_035010 631 GACGATCCATCTCATC----CAATGTACATAAAAACTTTGTGGGGAATCG 676
BSNT_00453___ 671 GTTATAAATTAGGAGAGTTTTAG 693
|||||||.||.|||||.|||||.
RBAM_035010 677 GTTATAAGTTGGGAGATTTTTAA 699
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