Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05792 and RBAM_035100

See Amino acid alignment / Visit BSNT_05792 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:18
# Commandline: needle
#    -asequence dna-align/BSNT_05792___spsG.1.9828.seq
#    -bsequence dna-align/RBAM_035100___spsG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05792___spsG-RBAM_035100___spsG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05792___spsG-RBAM_035100___spsG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05792___spsG
# 2: RBAM_035100___spsG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1116
# Identity:     674/1116 (60.4%)
# Similarity:   674/1116 (60.4%)
# Gaps:         207/1116 (18.5%)
# Score: 1810.5
# 
#
#=======================================

BSNT_05792___      1 ATGCGTGTTGGGATCTTCGCAGACGGCGGCTATGAAAAGGGAATGGGCCA     50
                     |||||..||..|||.|||||.|||||.|||..|||.|..||.|||||.||
RBAM_035100__      1 ATGCGGATTTTGATTTTCGCGGACGGGGGCCGTGACATCGGCATGGGGCA     50

BSNT_05792___     51 TGTTGTCCGGATGAAGAGACTTGCGGAGGGGCTCA--AACAGCGA-TGCT     97
                     .|..||||||||||||...|||||  .||.|| ||  ||.|.|.| ||||
RBAM_035100__     51 CGCGGTCCGGATGAAGCTGCTTGC--CGGTGC-CATTAAGAACAATTGCT     97

BSNT_05792___     98 TGATTACGTTTTATACGAATCAGGAG-----------TCTGAAGCGTTTC    136
                     ..||.|||||.||.||.|||.|.|||           ||||       ||
RBAM_035100__     98 CAATAACGTTCTACACAAATAAAGAGGCTTCTTCTTATCTG-------TC    140

BSNT_05792___    137 TTCATGAAGAGCATTGGCGTGTCATCGTAAAGCCGGAGCTGCAGCAGCAC    186
                     |||    .||.||.|||...||.|||.|.|||||.||...|.|.|||.|.
RBAM_035100__    141 TTC----TGATCAATGGGAAGTGATCATCAAGCCTGACAAGGAACAGAAG    186

BSNT_05792___    187 GAATTTATTCTCCGGGAAATAAAAAGCAAGAAGCT--TGATTTGCTTTTG    234
                     .||||||||.|||||||||||||.||..||  |||  |||..|.||..|.
RBAM_035100__    187 AAATTTATTGTCCGGGAAATAAACAGGCAG--GCTCCTGACCTTCTCATA    234

BSNT_05792___    235 TTTGATATTCTAG-------GCGCGCCTGCAGAGCTGTTAAAGAAAATAA    277
                     ||.|||.|.||.|       |.|.|.|||       ||||.||.||.|.|
RBAM_035100__    235 TTCGATCTGCTCGATATGCCGTGTGACTG-------GTTAGAGGAAGTCA    277

BSNT_05792___    278 AGACGGAGACA----GATGCGAAAATTGTTCTT-TTTGAAGAGAAAAACG    322
                     |.|.|.|..||    .|.||    ||.| |||| |||||  |||||||||
RBAM_035100__    278 AAAAGCATTCATCGGCACGC----ATCG-TCTTATTTGA--AGAAAAACG    320

BSNT_05792___    323 GTAAATCA----ATTCAATATA-GTGACGCAGTCATTAACGGAATTTACG    367
                     |.||  ||    |||| ||.|| |.||.||.||.||.|||||.|||||||
RBAM_035100__    321 GGAA--CATGTCATTC-ATTTATGCGATGCCGTTATAAACGGCATTTACG    367

BSNT_05792___    368 GTGACATCAGAAGCAGGGTGTAC-GTTCA---GGGAAACACACGC-ATTT    412
                     |.|...|.|.||||.||    || |||||   |||.|.|.| ||| .|.|
RBAM_035100__    368 GAGGGCTGAAAAGCCGG----ACGGTTCAAATGGGCAGCGC-CGCGGTAT    412

BSNT_05792___    413 ATGAAGGTCCGGACTATCTTATTCTTCACCCCGCCTTTCAGGCCGCAAGA    462
                     |||||||.|||||.|||.|.||||||||.||.|..|||.|....||.|.|
RBAM_035100__    413 ATGAAGGCCCGGAATATATGATTCTTCATCCGGGTTTTGAAAAAGCCAAA    462

BSNT_05792___    463 GAGGATTA-CACACTTAAGAAAGACTGCCG--CAATATCCTTGTTGCATT    509
                     .||..||| || .||.|..|||||.|||||  |.||||  |.|||.||||
RBAM_035100__    463 CAGCTTTATCA-GCTGAGAAAAGAATGCCGGACCATAT--TGGTTTCATT    509

BSNT_05792___    510 AGGAGGAAGTGATCCGAAGCAGCTTATTTTTAAAGTGCTGG----CTGCC    555
                     |||||||||.||.||||||.|||||.|.|||||||||.|||    .||||
RBAM_035100__    510 AGGAGGAAGCGACCCGAAGAAGCTTGTCTTTAAAGTGATGGAAGCATGCC    559

BSNT_05792___    556 GCTGATCAAGTCCCCGACATAAAAGACAAAAAC--ATGATGTTTGTAATG    603
                     ||.|  ||  ||||||||||..|  .|.|||||  .||||..|.||.|||
RBAM_035100__    560 GCCG--CA--TCCCCGACATTCA--TCGAAAACGAGTGATCATCGTCATG    603

BSNT_05792___    604 GGGAGCGCTTCACCGCATCAAGAGGCAGTCCGAAGGCGGATCGAAAAGAA    653
                     ||..||||..|.||.|||...||.|..||.||  .|||.|||..|.|.||
RBAM_035100__    604 GGCGGCGCCGCGCCTCATGCTGATGACGTGCG--CGCGCATCTTACACAA    651

BSNT_05792___    654 ---------GCCGCAGTACAAGATGATCGAA--CAGACAAATGATATGGC    692
                              ||||       |||||.|  ||  |||||||||||.|||||
RBAM_035100__    652 ATGCCTTATGCCG-------AGATGGT--AAGGCAGACAAATGACATGGC    692

BSNT_05792___    693 -------------AGGTTTGATGAAACAAGCGGACGCAGCCATTGTCGCC    729
                                  |||..||||           |.|  |||.|.||..||
RBAM_035100__    693 CGCGCTTCTTTCGAGGGCTGAT-----------ATG--GCCGTCGTGTCC    729

BSNT_05792___    730 GGCGGCATCTCTCTATATGAAGCCATTTGCATCGGCGTGCCGTGCCTTGT    779
                     |||||.|||.||.||||||||.|||||||.|..||.|||||.|||.|.||
RBAM_035100__    730 GGCGGGATCACTTTATATGAAACCATTTGTACAGGTGTGCCCTGCATCGT    779

BSNT_05792___    780 TCTTTCTCAGGTTGAGCATCAAACGGCAACAGCAAAAACATTTGCTGGCC    829
                     .||||||||.||.|||||||||||.|..||.||...||.|||.||.|..|
RBAM_035100__    780 ACTTTCTCAAGTGGAGCATCAAACTGAGACGGCGGGAAAATTCGCCGCAC    829

BSNT_05792___    830 AAGGCGCCGCTCTTGATCTTGGTTTGGGTGAGCTTGTACCGGATGAAACA    879
                     ..||.|||||..||.|.||.||..|.|||||                  |
RBAM_035100__    830 GGGGGGCCGCCGTTCACCTCGGCCTTGGTGA------------------A    861

BSNT_05792___    880 CTCATCTATCA---GATGT-----CAC-GCAT---TATGA----GCAGC-    912
                     ..||  |||||   ||.||     ||| ||||   |.|||    ||.|| 
RBAM_035100__    862 GGCA--TATCAGCGGACGTTCTCGCACGGCATATGTCTGACATGGCCGCT    909

BSNT_05792___    913 ---TATCCTCTTCG--CC---TTTCTTTGCACAAGGGAGGAAGGCCGCTC    954
                        |||||.||.||  ||   .|||.|  ||.||   .||||.||||||.
RBAM_035100__    910 GATTATCCGCTGCGGACCGGACTTCAT--CAAAA---CGGAAAGCCGCTG    954

BSNT_05792___    955 GTGGATGGCAAAGGCATTATACGGGTAACAGCTATTCTTCAAGATTTATA   1004
                     ||.||.||||..|||||.|.|||||...|.||.||||||.|.||||  |.
RBAM_035100__    955 GTTGACGGCAGGGGCATCAAACGGGCGGCGGCGATTCTTTATGATT--TG   1002

BSNT_05792___   1005 TGAACAAGAGATATAA   1020
                     |||             
RBAM_035100__   1003 TGA-------------   1005


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