Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05842 and RBAM_035450

See Amino acid alignment / Visit BSNT_05842 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:21
# Commandline: needle
#    -asequence dna-align/BSNT_05842___galT.1.9828.seq
#    -bsequence dna-align/RBAM_035450___galT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05842___galT-RBAM_035450___galT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05842___galT-RBAM_035450___galT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05842___galT
# 2: RBAM_035450___galT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1621
# Identity:    1101/1621 (67.9%)
# Similarity:  1101/1621 (67.9%)
# Gaps:         158/1621 ( 9.7%)
# Score: 3512.5
# 
#
#=======================================

BSNT_05842___      1 ATGAGTATTATTGA---ACATCTGGAACAGCTGCTTGA----GTATGGCC     43
                     ||| |.|  |||||   .||..||||||    |.||.|    |||.||..
RBAM_035450__      1 ATG-GCA--ATTGAGCGGCACGTGGAAC----GTTTAATCCGGTACGGAT     43

BSNT_05842___     44 TGGAACGAAAATTGATTT-CGATCTGGGATCGGGAATATACGAGAAACCG     92
                     ||.||..|.|..|||||| |.|||| .|||...|||||||||||||||||
RBAM_035450__     44 TGCAAAAAGAGCTGATTTCCTATCT-TGATATTGAATATACGAGAAACCG     92

BSNT_05842___     93 TCTTTATGAAGCGCTGGGCATCACACATCCCGAGCCGGTCTCCAGCAC--    140
                     |.|.||||||||..||...|||||.|||||.||   ||| |.|||.||  
RBAM_035450__     93 TTTGTATGAAGCTTTGCATATCACCCATCCGGA---GGT-TTCAGAACAG    138

BSNT_05842___    141 ----------------CAGCATCAAGCAGTCACAAAGCCTGCCGGACTTG    174
                                     |.||||||              .||.|||||||.
RBAM_035450__    139 AAAGAAAATGTATCGGCGGCATCA--------------TTGTCGGACTTA    174

BSNT_05842___    175 CTAGCTCCCATCTATAAATGGGCTGCGGAAACCGGCCGAATGGAAGCGGA    224
                     .|.||.||.||.|||.|||||||.||.|||||.|||||.||.|.|||.||
RBAM_035450__    175 TTGGCCCCGATTTATGAATGGGCGGCAGAAACGGGCCGGATTGCAGCCGA    224

BSNT_05842___    225 TACAGATACGTACCGTGACCTGCTCAGCGCAAAGCTGATGGGCTGTTTTG    274
                     ||||||.||.||.||.||||||||.|||||.|||.|.||||||||.||||
RBAM_035450__    225 TACAGACACCTATCGCGACCTGCTGAGCGCGAAGATCATGGGCTGCTTTG    274

BSNT_05842___    275 TGCCTGC-CCCGTCCGAG---GTCATTCGCAAATTTGAAGAGACAAAAGC    320
                      .||.|| .|||||||||   |||..|||   .||||||||.|||||.||
RBAM_035450__    275 -CCCCGCAGCCGTCCGAGATTGTCCGTCG---TTTTGAAGAAACAAAGGC    320

BSNT_05842___    321 ATTATACGGCCCAAAACAGGCGACAAAGGAATTCTATCAATATTCAGAGG    370
                     ..|..||||.||..|.|||||||||||||..||.||.|.||.||||||||
RBAM_035450__    321 GGTGCACGGACCGGAGCAGGCGACAAAGGCGTTTTACCGATTTTCAGAGG    370

BSNT_05842___    371 ATGTCTATTATATACGGACTGACAGAATTGCCAAA----AATGTTCATTG    416
                     ||||.||||||||.||..|.||||||||    |||    |||||....||
RBAM_035450__    371 ATGTGTATTATATCCGTTCGGACAGAAT----AAAGCGGAATGTCGGGTG    416

BSNT_05842___    417 GACGG-TGCCGACCGAATATGGCGAGCTGGAAATGACCATTAACCTATCA    465
                     ||||| || .|||.|..||.||..|||||||.||.||.||.|||||.|||
RBAM_035450__    417 GACGGCTG-AGACGGCTTACGGAAAGCTGGACATCACGATCAACCTTTCA    465

BSNT_05842___    466 AAGCCTGAAAAGGACCCGAAAGCGATTGCGGCTGCAAAAGAGCAGGAACA    515
                     ||.||.|||||.||.||||||||.|||||.|||||.|||||||||...||
RBAM_035450__    466 AAACCGGAAAAAGATCCGAAAGCAATTGCCGCTGCCAAAGAGCAGCCTCA    515

BSNT_05842___    516 GACAAATTATCC--GATGTGTTTGCTGTGTAAAGAAAATGTCGGCTTCGA    563
                     ..|..|||||||  ||||||||  ||.|||||||||||||||||.|.|||
RBAM_035450__    516 ATCCGATTATCCGAGATGTGTT--CTTTGTAAAGAAAATGTCGGGTACGA    563

BSNT_05842___    564 GGGAAGCGTGAATCATCCAGCCCGGCAAAATCACAGAATCATTCCGGTCA    613
                     |||.||...|.||||.||.||.||.|||||.|...|..||||||||||.|
RBAM_035450__    564 GGGGAGACCGGATCACCCGGCGCGTCAAAACCTTCGTGTCATTCCGGTAA    613

BSNT_05842___    614 TCCTTGAGGACGAACAATGGTTCCTGCAATTCTCGCCATATGTCTATTAT    663
                     |.||.|..||.||.||.|||||.||||||||.||.||.|||||.|||||.
RBAM_035450__    614 TTCTCGGCGATGAGCAGTGGTTTCTGCAATTTTCTCCGTATGTGTATTAC    663

BSNT_05842___    664 CCGGAGCACTGCATTGTCTTAAAAGGTGAA----CATGAACCGATGGAGA    709
                     |.||||||.|||||.||.||.||||    |    ||.|||||||||.|||
RBAM_035450__    664 CGGGAGCATTGCATCGTTTTGAAAG----ACCGGCACGAACCGATGAAGA    709

BSNT_05842___    710 TCAGCAAAAAAACATTTGGAAGGCTGCTGGCATTTCTTGGCCAATATCCG    759
                     ||||.||||||||.||||...||||||||.|.||..|..||||.|||||.
RBAM_035450__    710 TCAGTAAAAAAACGTTTGACCGGCTGCTGTCGTTCGTCAGCCAGTATCCT    759

BSNT_05842___    760 CATTATTTTATCGGTTCAAACGCGGATCTGCCGATTGTCGGCGGCAGCAT    809
                     |||||||||.|||||||.||.||.|||||||||||||||||||||||.||
RBAM_035450__    760 CATTATTTTCTCGGTTCCAATGCTGATCTGCCGATTGTCGGCGGCAGTAT    809

BSNT_05842___    810 CCTAAGCCATGATCATTTCCAAGGCGGCGCGCATGATTTTCCAATGGCAC    859
                     ..|||||||.||.|||||.||.||.|||....||||.||.||.|||||.|
RBAM_035450__    810 TTTAAGCCACGACCATTTTCAGGGGGGCAATTATGAATTCCCGATGGCGC    859

BSNT_05842___    860 GTGCAGA-AGCGGAAGACGTTTATGAATTAAA-------TGATTATCC--    899
                     |.||.|| |..|.|||.||        .||.|       |||.|||||  
RBAM_035450__    860 GGGCGGAGACAGAAAGCCG--------GTACAGGCTGCCTGACTATCCGA    901

BSNT_05842___    900 ---CGGCGTGTCGCTGGGCTTAGTGAAGTGGCCGATGTCTGTGCTCAGGC    946
                        |||.||     ||||..|.|||||||||||||||||.||..||.|.|
RBAM_035450__    902 AAACGGTGT-----TGGGAATTGTGAAGTGGCCGATGTCGGTCATCCGCC    946

BSNT_05842___    947 TCCAAGGAGACGA-ACCGGGTCATG---TCGCCGAAGCTGCTGA--CCAT    990
                     |.|||.|   ||| |..|.||| ||   |..|||..||.||.||  ||  
RBAM_035450__    947 TGCAAAG---CGAGAGTGCGTC-TGAGCTTTCCGGCGCGGCGGATGCC--    990

BSNT_05842___    991 ATCTTCCGCACGTGGCAGACG--TATTCCGATGAAAAAGCCGGC--ATTG   1036
                     |||.|.||..|.||||  .||  ||||||||||    ||.||||  ||..
RBAM_035450__    991 ATCCTGCGGGCATGGC--GCGGTTATTCCGATG----AGGCGGCTGATCT   1034

BSNT_05842___   1037 C--CGCCTATACAGGCGATACGCCCCATAATACGGTCACACCGATTGCGC   1084
                     |  |||.|.|.||||.||.||.||.||.|||||..|.||.||||||||.|
RBAM_035450__   1035 CCTCGCGTGTTCAGGAGAAACACCGCACAATACAATTACGCCGATTGCCC   1084

BSNT_05842___   1085 GGCGCAGGGGAGAC---TTGTACGAACTCGATATCGTACTGAGGAACAAC   1131
                     |||   ||.||.||   ||.|.||||.|.|||.||||.||.||.||.|||
RBAM_035450__   1085 GGC---GGAGAAACGGTTTATTCGAATTAGATCTCGTCCTCAGAAATAAC   1131

BSNT_05842___   1132 CGGACGGATGAGGAGCATCCATTAGGAATATTTCATCCTCATCAAGAAGT   1181
                     ||..|...|||.||||||||..|.|||||.||||||||.|||||.|||||
RBAM_035450__   1132 CGCGCCTCTGATGAGCATCCGCTGGGAATTTTTCATCCCCATCAGGAAGT   1181

BSNT_05842___   1182 CCACCATATTAAAAAAGAAAATATCGGCCTGATTGAGGTCATGGGATTGG   1231
                     .||.||..|.|||||||||||||||||.|||||||||||.|||||..|.|
RBAM_035450__   1182 TCATCACCTGAAAAAAGAAAATATCGGACTGATTGAGGTAATGGGGCTTG   1231

BSNT_05842___   1232 CGATATTGCCTGGCCGCTTACAGGAGGAAATGAAAGAAACGGCAGCGGCG   1281
                     ||||..||||.||||||.|..|..|.|||||||||.|.|||||.|..|||
RBAM_035450__   1232 CGATTCTGCCGGGCCGCCTTGAACAAGAAATGAAATACACGGCTGAAGCG   1281

BSNT_05842___   1282 CTATGCTCTGCTGATCCAAAAACAGCCTTA---GAACAAAATCCGCTC-A   1327
                     ||.|||||..|.||.||..||.|.|.||||   |.|.|    ||..|| .
RBAM_035450__   1282 CTGTGCTCACCGGACCCGGAAGCGGTCTTAACGGCAGA----CCTTTCTG   1327

BSNT_05842___   1328 CGGCAAAGCATAGTGAATGGGCTCTTCGGATGATGGAAAA----AAGAAC   1373
                     ||.|||||||||..||.|||||.||..|..||.||.|.||    |||   
RBAM_035450__   1328 CGTCAAAGCATAAAGATTGGGCGCTCAGTGTGCTGCATAAGCGGAAG---   1374

BSNT_05842___   1374 CATAACAAAAGAGAATGCAGATCTAG--TCATAAAAGAAGAGCTGGGACA   1421
                      .||||.|||||.||.||.||.| ||  || |.|||||.||..|.||.||
RBAM_035450__   1375 -GTAACGAAAGAAAACGCGGAAC-AGATTC-TGAAAGAGGAAATCGGCCA   1421

BSNT_05842___   1422 TGTATTCGCTCGCATTCTTGAACACGCCGGTGTATTTAAACAGACAGCAG   1471
                     ||..||.||.||.||.||.||.||.|||||.||.||||||||.||||.||
RBAM_035450__   1422 TGCCTTTGCGCGGATACTGGAGCATGCCGGCGTCTTTAAACAAACAGAAG   1471

BSNT_05842___   1472 TGGGAAAACAGGCCTTCAGAAGGTTCATCGATCAGTTGGGCGCCAAACCA   1521
                     ..||.|.|..|||.|||.|..||||.|||...||.||||||||...|||.
RBAM_035450__   1472 AAGGCAGAGCGGCTTTCCGGCGGTTTATCCGCCATTTGGGCGCTCTACCG   1521

BSNT_05842___   1522 GTCAAAAGCCTCAACCGCTAG   1542
                     |..|||||||.||.||..||.
RBAM_035450__   1522 GAAAAAAGCCCCATCCCATAA   1542


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