Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05846 and RBAM_035490

See Amino acid alignment / Visit BSNT_05846 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:22
# Commandline: needle
#    -asequence dna-align/BSNT_05846.1.9828.seq
#    -bsequence dna-align/RBAM_035490.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05846-RBAM_035490.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05846-RBAM_035490.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05846
# 2: RBAM_035490
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 169
# Identity:     118/169 (69.8%)
# Similarity:   118/169 (69.8%)
# Gaps:          17/169 (10.1%)
# Score: 401.0
# 
#
#=======================================

BSNT_05846         1 ATGAAAACTCATGTTAAAAAAGATTTGGACAAAGGTTGGCATATGTTAAT     50
                     ||||||||||||||.|..||||||.|.||..|||.||||||..|||||||
RBAM_035490        1 ATGAAAACTCATGTAATGAAAGATATAGATCAAGATTGGCAATTGTTAAT     50

BSNT_05846        51 TCAAGAAGCTAGATCCATTGGATTAGGCATTCATGATGTGAGGCAGTTTT    100
                     ||||||.||||||..|||.||.||...||||.|.||||||||||..||.|
RBAM_035490       51 TCAAGAGGCTAGAATCATGGGTTTGCACATTGACGATGTGAGGCGCTTCT    100

BSNT_05846       101 TAGAAT-CTGAGACAGC-ATCGAGAAAGAAAAACCA--CAAAAAAACCGT    146
                     || ||| ||||.|.||| .|..|||||.|||.||||  .|||||.|||.|
RBAM_035490      101 TA-AATACTGAAAAAGCGGTGAAGAAAAAAACACCAATGAAAAACACCAT    149

BSNT_05846       147 CCGGCAAGACTAG------    159
                     |||      |.||      
RBAM_035490      150 CCG------CCAGCGGTAA    162


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