Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05930 and RBAM_035990

See Amino acid alignment / Visit BSNT_05930 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:26
# Commandline: needle
#    -asequence dna-align/BSNT_05930___cydC.1.9828.seq
#    -bsequence dna-align/RBAM_035990___cydC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05930___cydC-RBAM_035990___cydC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05930___cydC-RBAM_035990___cydC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05930___cydC
# 2: RBAM_035990___cydC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1717
# Identity:    1349/1717 (78.6%)
# Similarity:  1349/1717 (78.6%)
# Gaps:          26/1717 ( 1.5%)
# Score: 5221.5
# 
#
#=======================================

BSNT_05930___      1 ATGGGAAAAGACCTGTTTCGATATAAAGGAATGAAGCGGATTCTCACCTT     50
                     |||||||||||||||||||..|||||||||||||||||||||||..|..|
RBAM_035990__      1 ATGGGAAAAGACCTGTTTCTTTATAAAGGAATGAAGCGGATTCTTGCGAT     50

BSNT_05930___     51 GATTACTTGTTTAACGCTGATTCAGACAGCCGCCATTATTATGCAGGCAG    100
                     .|||||..|.||||||.|.||.||.||.||||||||.||..|||||||.|
RBAM_035990__     51 CATTACGGGATTAACGATTATACAAACGGCCGCCATCATCTTGCAGGCGG    100

BSNT_05930___    101 AGTGGCTGAGTGAGGCCTTAACCGGACTGTTCAACGGGAAGGGCATTACC    150
                     |.||||||||..||||..||||||||.|.||.|||||||||.|.|||.|.
RBAM_035990__    101 AATGGCTGAGCCAGGCGGTAACCGGATTATTTAACGGGAAGCGGATTGCT    150

BSNT_05930___    151 TCCCTTTTTCCGGTGATCAGCTTTTTCCTCATCGCTTTTATCGCCCGGCA    200
                     ||.||||.||||||.|||.||||||||||..|.||.|||.|.|.||||||
RBAM_035990__    151 TCTCTTTATCCGGTTATCGGCTTTTTCCTGCTTGCGTTTTTGGTCCGGCA    200

BSNT_05930___    201 CGGGGTGACGGTGGCGCGACAGAAAATCGTCTATCAATACGCCGCCCGGA    250
                     .|.||||||...||..||.|||||||||||.||.|||||.|||||.|..|
RBAM_035990__    201 TGCGGTGACAACGGTCCGGCAGAAAATCGTGTACCAATATGCCGCGCAAA    250

BSNT_05930___    251 CAGGAGCAGATTTGAGGAAAAGTTTTCTTGATCAGCTGTTCCGATTAGGC    300
                     |.||.|||||.||.||.|||||.||||||||.||..|||||||..|.|||
RBAM_035990__    251 CCGGCGCAGACTTAAGAAAAAGATTTCTTGAGCAATTGTTCCGTCTCGGC    300

BSNT_05930___    301 CCCCGCTTTGCAAAGAAAGAAGGGACGGGGCAAATGGTGACGCTGGCGAT    350
                     |||||||||||.||.|||||.|||||.||.|..|||||||||||||||||
RBAM_035990__    301 CCCCGCTTTGCGAAAAAAGAGGGGACAGGCCGGATGGTGACGCTGGCGAT    350

BSNT_05930___    351 GGAAGGCATCAGCCAGTTCCGCCGCTACCTGGAGCTGTTTCTGCCGAAAA    400
                     ||||||||||||||||||||||||.||..|.|||||||||||||||||||
RBAM_035990__    351 GGAAGGCATCAGCCAGTTCCGCCGTTATTTAGAGCTGTTTCTGCCGAAAA    400

BSNT_05930___    401 TGGTCAGCATGGCGATTGTGCCTGCGGCAGTTGTCATTTATGTGTTTTTT    450
                     ||||||||||||||||||||||.||.||.|||||.|||||.|||||||||
RBAM_035990__    401 TGGTCAGCATGGCGATTGTGCCGGCTGCCGTTGTTATTTACGTGTTTTTT    450

BSNT_05930___    451 CAGGATCGGACATCAGCCATCATT-TTAGTCGCTGCTATGCCGATTCTGA    499
                     ||||||...|||||.||..|.||| |.|.|| .|||..|.||||||.|||
RBAM_035990__    451 CAGGATAAAACATCGGCTTTGATTCTGATTC-TTGCGCTTCCGATTTTGA    499

BSNT_05930___    500 TCATCTTTATGATTCTTCTCGGCCTTGTCGCGCAGAGAAAAGCGGATCGT    549
                     |..|.|||||||||||.|||||.|||||.||.||||.||||||.|||||.
RBAM_035990__    500 TTGTATTTATGATTCTGCTCGGACTTGTGGCACAGAAAAAAGCCGATCGC    549

BSNT_05930___    550 CAGTGGAAATCCTATCAGAGACTTTCCAATCATTTTGTTGATTCTCTTCG    599
                     ||.|||||.||||||||||..||||||||||||||.||.|||||.||.||
RBAM_035990__    550 CAATGGAAGTCCTATCAGACGCTTTCCAATCATTTCGTGGATTCGCTCCG    599

BSNT_05930___    600 CGGGCTGGAGACATTGCGTTTCCTAGGTTTGAGCAAGTCACACAGCAAAA    649
                     |||.||||||||||||||.||..||||.||.|||||.||||||||.||||
RBAM_035990__    600 CGGACTGGAGACATTGCGGTTTTTAGGATTAAGCAAATCACACAGTAAAA    649

BSNT_05930___    650 ATAT-TTTCTATGTGAGTGAGCGGTATCGCAAGGCAACGATGAGCACACT    698
                     |||| |||| ||||.||||||.|.||.||||||||.|||||||||||.||
RBAM_035990__    650 ATATCTTTC-ATGTCAGTGAGAGATACCGCAAGGCGACGATGAGCACGCT    698

BSNT_05930___    699 CCGGGTAGCGTTTTTGTCATCATTCGCCCTCGATTTTTTCACGATGCTGT    748
                     ||||||.||||||||.||||||||||||||.|||||.||.||||||||||
RBAM_035990__    699 CCGGGTCGCGTTTTTATCATCATTCGCCCTGGATTTCTTTACGATGCTGT    748

BSNT_05930___    749 CGGTGGCGACAGTCGCAGTATTTCTGGGCCTGCGTCTCATTGACGGCGAT    798
                     |||||||||||||.||.||.|||||.|||.||||.||.||.|||||..|.
RBAM_035990__    749 CGGTGGCGACAGTGGCGGTGTTTCTCGGCTTGCGGCTGATAGACGGACAA    798

BSNT_05930___    799 ATTTTGCTTGGCCCCGCTTTAACGGCGCTTATTCTGGCGCCTGAGTATTT    848
                     |||.||||.||.||.||.||.||.|||||.|||||.||||||||.|||||
RBAM_035990__    799 ATTCTGCTCGGACCGGCATTGACCGCGCTCATTCTCGCGCCTGAATATTT    848

BSNT_05930___    849 TTTGCCGGTGCGGGAAGTGGGGAATGATTATCATGCAACGCTGAACGGCC    898
                     |.|.|||||.||.|||||||||||||||||.||.||.|||.|.|||||.|
RBAM_035990__    849 TCTCCCGGTCCGCGAAGTGGGGAATGATTACCACGCGACGTTAAACGGGC    898

BSNT_05930___    899 AGGAAGCAGGAAAAACCATTCAAGAGATTTTGTCGCAGCCTGGTTTTAAA    948
                     ||||.||.||.|||||||||||||.|||||||.|||||||.|||||||||
RBAM_035990__    899 AGGAGGCGGGGAAAACCATTCAAGCGATTTTGGCGCAGCCCGGTTTTAAA    948

BSNT_05930___    949 GAAGAGACGCCGCTTCAGCTCGAGGATTGGTCCGATCAGGATGAGCTGAA    998
                     |||||.|.||||||..|.||.||....|||.|.||...||||||..|..|
RBAM_035990__    949 GAAGAAAAGCCGCTCGAACTTGATACGTGGACTGACGGGGATGAATTACA    998

BSNT_05930___    999 GCTGTCAGGCG--TGTCAGTCGGCCGTTCGGTGTCTGATATTCATCTCTC   1046
                     ||  |.|.|||  ||||.|||.|....|||.|||||||..|||||||.||
RBAM_035990__    999 GC--TTACGCGTTTGTCCGTCCGAGAATCGATGTCTGAATTTCATCTGTC   1046

BSNT_05930___   1047 ATTCAAAGGCAAGAAAAAAATCGGCATTATCGGTGCAAGCGGCGCCGGAA   1096
                     .||||||||.|||||.||||||||.||||||||.|.||||||.||.||||
RBAM_035990__   1047 CTTCAAAGGGAAGAAGAAAATCGGGATTATCGGGGAAAGCGGTGCGGGAA   1096

BSNT_05930___   1097 AATCAACATTAATTGATATTCTCGGCGGATTTTTAGAGCCGGATGGCGG-   1145
                     ||||.|||.|.||||||.|.||.|||||.|||||||||||.|....||| 
RBAM_035990__   1097 AATCGACACTCATTGATGTGCTGGGCGGCTTTTTAGAGCCTGCGTCCGGT   1146

BSNT_05930___   1146 GATGATTGAGGTTAATGGTACAAGCCGGTCCCATTTGCA---GGACGGCA   1192
                     || |||..||||.||.|||..|..|||.||.|||.||||   |||||   
RBAM_035990__   1147 GA-GATCAAGGTAAACGGTGAATCCCGCTCACATCTGCAGTCGGACG---   1192

BSNT_05930___   1193 GCTGGCAGAAAAACCTTCTGTACATCCCTCAGCATCCGTACATTTTTGAT   1242
                     ||||||||||..|.||.||.||.||.||.|||||.|||||||||||||||
RBAM_035990__   1193 GCTGGCAGAAGCAGCTGCTTTATATTCCGCAGCACCCGTACATTTTTGAT   1242

BSNT_05930___   1243 GATACGCTTGGCAATAACATTCGCTTCTACCACCCAAGCGCTTCGGCAGA   1292
                     ||.||||||...|||||.||.||.||.||.||.||....||||||...||
RBAM_035990__   1243 GACACGCTTTTGAATAATATCCGGTTTTATCATCCTGATGCTTCGCGTGA   1292

BSNT_05930___   1293 GGATACAGCCCGTGCTGCTGCGGCGGCGGGAC-TGGCGGAGCTG----GT   1337
                     |||.||.||.|..||.|||....|||||||.| |..|||| |||    ||
RBAM_035990__   1293 GGAAACGGCGCAGGCCGCTAGATCGGCGGGTCTTTCCGGA-CTGATCCGT   1341

BSNT_05930___   1338 GGATAGCCTTCCTGAAGGATTAGAGGGGCGGATCGGGGAAGGCGGCCGGG   1387
                      |||   ||.||.|..||..|.||.||.||||||||.||.|||||.||||
RBAM_035990__   1342 -GAT---CTGCCCGGCGGTCTTGACGGCCGGATCGGCGAGGGCGGACGGG   1387

BSNT_05930___   1388 CGCTCAGCGGCGGCCAGGCACAGCGTGTCGCGCTGGCCCGCGCCTTTTTG   1437
                     ||||||||||.||.|||||.||||||||||||||||||.|.||||||||.
RBAM_035990__   1388 CGCTCAGCGGAGGGCAGGCTCAGCGTGTCGCGCTGGCCAGAGCCTTTTTA   1437

BSNT_05930___   1438 GGAAACCGTCCGATCCTGCTGCTGGATGAGCCGACCGCCCATCTTGATAT   1487
                     ||||||||.|||||.||.||..||||||||||||||||.||.||||||||
RBAM_035990__   1438 GGAAACCGGCCGATTCTCCTTTTGGATGAGCCGACCGCTCACCTTGATAT   1487

BSNT_05930___   1488 CGAAACTGAATATGAAATAAAAGAAACGATGCTGGATTTATTTGAGGATA   1537
                     .|||||.||||||||||||||||||||||||...||..|.|||||..|.|
RBAM_035990__   1488 TGAAACAGAATATGAAATAAAAGAAACGATGAAAGACCTGTTTGAAAACA   1537

BSNT_05930___   1538 AGCTCGTTTTTCTCGCGACTCACCGCCTTCACTGGATGCTCGATATGGAC   1587
                     |.||.||.|||||.||.||||||||.||||||||||||||.||.||||||
RBAM_035990__   1538 AACTTGTCTTTCTGGCCACTCACCGTCTTCACTGGATGCTTGAGATGGAC   1587

BSNT_05930___   1588 GAAATTATCGTGCTGGACGGGGGCAGGGTTGCGGAAGTCGGGACTCACAA   1637
                     ||||||||||||||.||.|..|||..|||.||||||.||||.||.|||.|
RBAM_035990__   1588 GAAATTATCGTGCTTGATGACGGCGCGGTGGCGGAAATCGGCACCCACGA   1637

BSNT_05930___   1638 TGAACTGCTGGAGAAAAACGGTGTGTATACCAAACTCGTGAAGGCACAAC   1687
                     .|||.||.|||.||||.|.||.||.||..|||||||.||.|||||.||||
RBAM_035990__   1638 CGAATTGATGGCGAAACAAGGCGTATACGCCAAACTTGTAAAGGCGCAAC   1687

BSNT_05930___   1688 TGGGGGAAAGAGCATGA   1704
                     |||||||||||.|||||
RBAM_035990__   1688 TGGGGGAAAGAACATGA   1704


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