Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05932 and RBAM_036010

See Amino acid alignment / Visit BSNT_05932 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:27
# Commandline: needle
#    -asequence dna-align/BSNT_05932___cydA.1.9828.seq
#    -bsequence dna-align/RBAM_036010___cydA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05932___cydA-RBAM_036010___cydA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05932___cydA-RBAM_036010___cydA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05932___cydA
# 2: RBAM_036010___cydA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1412
# Identity:    1159/1412 (82.1%)
# Similarity:  1159/1412 (82.1%)
# Gaps:          10/1412 ( 0.7%)
# Score: 4742.0
# 
#
#=======================================

BSNT_05932___      1 ATGAGTGAATTGGTATTAGCCCGCATACAATTTGCATCAACAACGTTGTT     50
                     ||||||||.|||||||||||||||||.|||||||||||.|||||.|||||
RBAM_036010__      1 ATGAGTGAGTTGGTATTAGCCCGCATTCAATTTGCATCTACAACATTGTT     50

BSNT_05932___     51 TCACTTCTTGTTTGTGCCGATGTCTATCGGGCTTGTGTTTATGGTTGCGT    100
                     ||||||||||||||||||..||||||||||||||||||||||||||||.|
RBAM_036010__     51 TCACTTCTTGTTTGTGCCTTTGTCTATCGGGCTTGTGTTTATGGTTGCTT    100

BSNT_05932___    101 TGATGGAGACTCTTTATCTTGTAAAGAAAAATGAGCTGTATCTCAAAATG    150
                     ||||||||||.||||||.||||.||.|||.|.|||...||||||||||||
RBAM_036010__    101 TGATGGAGACGCTTTATGTTGTCAAAAAACAAGAGACCTATCTCAAAATG    150

BSNT_05932___    151 GCAAAGTTTTGGGGACACTTATTCTTAATAAATTTCGCAGTCGGTGTTGT    200
                     ||.||.||||||||.||..|.||.|||||.||.|||||.|||||.||.||
RBAM_036010__    151 GCTAAATTTTGGGGGCATCTCTTTTTAATTAACTTCGCTGTCGGCGTCGT    200

BSNT_05932___    201 AACGGGGATTTTGCAAGAATTCCAGTTTGGACTGAACTGGTCTGATTACT    250
                     .||.||||||.|.||.|||||||||||.|||.||||||||||||||||.|
RBAM_036010__    201 CACAGGGATTCTTCAGGAATTCCAGTTCGGATTGAACTGGTCTGATTATT    250

BSNT_05932___    251 CCCGTTTTGTCGGAGATGTATTTGGCGCTCCCCTTGCGATTGAAGCATTA    300
                     ||||||||||||||||.||||||||.|||||.||||||.|||||||..|.
RBAM_036010__    251 CCCGTTTTGTCGGAGACGTATTTGGAGCTCCGCTTGCGGTTGAAGCGCTT    300

BSNT_05932___    301 TTGGCGTTTTTCATGGAATCTATTTTTATCGGATTATGGATTTTTGGCTG    350
                     |||||||||||.|||||.||||||||||||||||||||||||||.|||||
RBAM_036010__    301 TTGGCGTTTTTTATGGAGTCTATTTTTATCGGATTATGGATTTTCGGCTG    350

BSNT_05932___    351 GGACCGCCTGCCGAAGAAAATTCACGCTCTCTGCATATGGCTCGTATCAT    400
                     ||||||..|..|.||.|||.|.||....||.|||||.|||||.||.||.|
RBAM_036010__    351 GGACCGTTTATCTAAAAAAGTGCATTTGCTTTGCATTTGGCTTGTGTCCT    400

BSNT_05932___    401 TCGGAACGATCATGTCATCTTTCTGGATTTTAACAGCAAACTCCTTTATG    450
                     ||||||||||.||||||||||||||||||||.||.||||||||.||.|||
RBAM_036010__    401 TCGGAACGATTATGTCATCTTTCTGGATTTTGACGGCAAACTCATTCATG    450

BSNT_05932___    451 CAGGAGCCGGTCGGTTTTACGATCAAAAACGGCCGCGCGGAAATGAATGA    500
                     ||||||||||||||.|||.||||.||||||||||||||||||||||||||
RBAM_036010__    451 CAGGAGCCGGTCGGCTTTGCGATTAAAAACGGCCGCGCGGAAATGAATGA    500

BSNT_05932___    501 TTTTGGCGCGTTGATTACAAACCCTCAGCTTTGGGTTGAATTCCCGCACG    550
                     |||.||.|||.|..|.||||||||||||||||||||||||||.||.||||
RBAM_036010__    501 TTTCGGGGCGCTTTTGACAAACCCTCAGCTTTGGGTTGAATTTCCTCACG    550

BSNT_05932___    551 TTATTTTCGGTGCGCTTGCCACTGGAGCTTTCTTTATTGCCGGAGTGAGT    600
                     |.||||||||.||||||||.||.||.|||||||||||.|||||.||.||.
RBAM_036010__    551 TCATTTTCGGGGCGCTTGCGACGGGTGCTTTCTTTATCGCCGGTGTCAGC    600

BSNT_05932___    601 GCTTTTAAACTGCTGAAGAAAAAAGAAGTGCCGTTCTTTAAGCAATCTTT    650
                     ||.||||||.|..|||||||||||||||||||.|||||..|..|||||||
RBAM_036010__    601 GCATTTAAATTATTGAAGAAAAAAGAAGTGCCTTTCTTCCATAAATCTTT    650

BSNT_05932___    651 TAAACTCGCAATGATCGTCGGCCTTTGTGCCGGTCTTGGCGTCGGCCTT-    699
                     .||.||..|.|||||.|||||.||....||||||.|.||||| .||.|| 
RBAM_036010__    651 CAAGCTTTCGATGATTGTCGGTCTGATCGCCGGTATCGGCGT-TGCGTTC    699

BSNT_05932___    700 AGCGGACACATGCAGGCTGAGCACTTGATGGAATCACAGCCGATGAAAAT    749
                     ||||||||.||||||||||||||.||.||||||||.||||||||||||||
RBAM_036010__    700 AGCGGACATATGCAGGCTGAGCATTTAATGGAATCGCAGCCGATGAAAAT    749

BSNT_05932___    750 GGCTGCCAGTGAAGGTCTATGGGAAGACAGCGGTGACCCTGCTGCTTGGA    799
                     ||||||||||||||..||.|||||.|||||||||||.|||||.||.||||
RBAM_036010__    750 GGCTGCCAGTGAAGCGCTTTGGGATGACAGCGGTGATCCTGCCGCGTGGA    799

BSNT_05932___    800 CCGCTTTTGCGACGATCGATACAAAAAATGAAAAAAGCTCAAATGAAA--    847
                     |.||||||||||..||.|||||.||.||.|||||||.|.||...||||  
RBAM_036010__    800 CGGCTTTTGCGAATATTGATACGAATAAAGAAAAAAACACATCAGAAATT    849

BSNT_05932___    848 TCAAAGTTCCTTATGCCTTGAGCTACTTGGCTTATCAGAAATTCAGCGGA    897
                     ||||  |||||||.||..||||||||||||||||.|||||.||||||||.
RBAM_036010__    850 TCAA--TTCCTTACGCACTGAGCTACTTGGCTTACCAGAAGTTCAGCGGC    897

BSNT_05932___    898 AGTGTCAAAGGGATGAAAACCCTTCAGGCTGAGTACGAAAAAATATACGG    947
                     |||||.||||||||||||||.|||||....||.||||||||||..|||||
RBAM_036010__    898 AGTGTGAAAGGGATGAAAACACTTCAAAAAGAATACGAAAAAACGTACGG    947

BSNT_05932___    948 AAAAGGCGACTACATTCCGCCAGTGAAAACGACATTCTGGAGCTTCCGCA    997
                     ||||||||||||.||.|||||.||.||||||||.||||||||.|||||||
RBAM_036010__    948 AAAAGGCGACTATATCCCGCCTGTTAAAACGACGTTCTGGAGTTTCCGCA    997

BSNT_05932___    998 TCATGGTAGGAGCAGGTGTTGTCATGATTCTTGCTGCGTTAGGCGGCCTT   1047
                     |.||||..|||||.||.|...|.|||||..||||.|||.|.|.||| |||
RBAM_036010__    998 TTATGGCGGGAGCGGGCGCGCTTATGATATTTGCCGCGATTGCCGG-CTT   1046

BSNT_05932___   1048 TGGT-TAAACCGCCGCAAAAAGCTTGAAAACAGCAAATGGTATTTGCGCA   1096
                     |..| |.||||||||||||||.|||.|.|..|||||.||||||||.||..
RBAM_036010__   1047 TATTCTGAACCGCCGCAAAAAACTTCATACGAGCAAGTGGTATTTACGGG   1096

BSNT_05932___   1097 TCATGATCGCGTTGATTTCCTTCCCGTTTCTTGCGAACTCCGCGGGCTGG   1146
                     .|||||||||..|||||.|.||.||.||..||||||||||.||.||.|||
RBAM_036010__   1097 GCATGATCGCACTGATTGCATTTCCATTCATTGCGAACTCTGCCGGTTGG   1146

BSNT_05932___   1147 ATTATGACAGAAATCGGACGTCAGCCTTGGACGGTTATGGGGTTAATGAC   1196
                     ||||||||.|||||||||||.|||||.||||||||.|||||...|.||||
RBAM_036010__   1147 ATTATGACTGAAATCGGACGCCAGCCGTGGACGGTCATGGGACAATTGAC   1196

BSNT_05932___   1197 AACCGCTCAATCTGTGTCACCTAACGTAACAGCGGGCTCCTTGTTATTCT   1246
                     .|||||.|||||.||.||.|||||||||||..||||.||..||.|.||.|
RBAM_036010__   1197 GACCGCACAATCCGTTTCTCCTAACGTAACGACGGGATCTCTGCTGTTTT   1246

BSNT_05932___   1247 CAATCATC-GCATTCGGTGTGATGTACATGATTCTTGGTGCACTGCTTGT   1295
                     ||||.||| || |||||.||.||||||.|||||.|.||.||.||||||||
RBAM_036010__   1247 CAATTATCAGC-TTCGGCGTCATGTACTTGATTTTAGGCGCGCTGCTTGT   1295

BSNT_05932___   1296 CTTCTTGTTTATCCGTGAGATTAAAAAAGGTGCGGAGCATAGTGATCATC   1345
                     .|||.|.||..|.|||||.|||||||||||||||||.|||..|||||||.
RBAM_036010__   1296 TTTCCTATTCGTTCGTGAAATTAAAAAAGGTGCGGACCATGATGATCATA   1345

BSNT_05932___   1346 ATGATGTTCCTGTATCAACAGATCCATTTAGTCAGGAGGTATACCATGGC   1395
                     |.|||||||||||||||||.|||||.||.|||||||||||.||||||||.
RBAM_036010__   1346 AGGATGTTCCTGTATCAACGGATCCGTTCAGTCAGGAGGTCTACCATGGG   1395

BSNT_05932___   1396 ATCTCTTCATGA   1407
                     .||.||||||||
RBAM_036010__   1396 GTCACTTCATGA   1407


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