Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05935 and RBAM_036020

See Amino acid alignment / Visit BSNT_05935 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:27
# Commandline: needle
#    -asequence dna-align/BSNT_05935.1.9828.seq
#    -bsequence dna-align/RBAM_036020___cimH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05935-RBAM_036020___cimH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05935-RBAM_036020___cimH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05935
# 2: RBAM_036020___cimH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1380
# Identity:     506/1380 (36.7%)
# Similarity:   506/1380 (36.7%)
# Gaps:         738/1380 (53.5%)
# Score: 1828.0
# 
#
#=======================================

BSNT_05935         0 --------------------------------------------------      0
                                                                       
RBAM_036020__      1 ATGGGAGAACTTCAACCAAAATTGCAAACGGATTCAATCCAAAAACAGGA     50

BSNT_05935         0 --------------------------------------------------      0
                                                                       
RBAM_036020__     51 ACGGACTGATAACTGGTTTGCCAGAGCAATGAATATAAGAATCGGCATTA    100

BSNT_05935         0 --------------------------------------------------      0
                                                                       
RBAM_036020__    101 TTCCTCTTCCTATCTATATCCTGCTTTTCTTGCTTATTACGGTGTTTGTC    150

BSNT_05935         0 --------------------------------------------------      0
                                                                       
RBAM_036020__    151 ATGAGCCGTGATGTAAAAAGCGACATTCTGACATCAATTGCCGTCATGAG    200

BSNT_05935         0 --------------------------------------------------      0
                                                                       
RBAM_036020__    201 TTTTTTCGGATTTACCTTCGGCCAGATCGGAAAATCCATTCCGATCGTGC    250

BSNT_05935         0 --------------------------------------------------      0
                                                                       
RBAM_036020__    251 GGTCCATCGGCGGCCCTGCGATTCTCGCAACCTTTATTCCATCCGCTGTC    300

BSNT_05935         0 --------------------------------------------------      0
                                                                       
RBAM_036020__    301 GTCTACTACCACCTGCTTCCGAAAGACATTATTACTTCAACAACAGAATT    350

BSNT_05935         0 --------------------------------------------------      0
                                                                       
RBAM_036020__    351 CACGGAAAGCTCCAACTTTCTCTATCTATTTATTGCCGGTATCGTCGTCG    400

BSNT_05935         0 --------------------------------------------------      0
                                                                       
RBAM_036020__    401 GCAGTATTCTCGGGATGAAAAGAGAGACGCTCGTCAAAGCTTTCGTCAAG    450

BSNT_05935         0 --------------------------------------------------      0
                                                                       
RBAM_036020__    451 ATTTTTATTCCGCTGATCGCCGGCTCGATCGCGGCCGCCATCGTCGGCTT    500

BSNT_05935         0 --------------------------------------------------      0
                                                                       
RBAM_036020__    501 ATGCGTCGGGACGCTGCTCGGGCTCGGCTTTCAGCACACACTGCTTTATA    550

BSNT_05935         0 --------------------------------------------------      0
                                                                       
RBAM_036020__    551 TTGTCGTTCCGATTATGGCGGGGGGTGTCGGTGAAGGCGCGATTCCTTTA    600

BSNT_05935         0 --------------------------------------------------      0
                                                                       
RBAM_036020__    601 TCCATCGGCTACTCCGATATTATGCCGATGTCCCAGGGAGACGCCTTTGC    650

BSNT_05935         1 -------------------ATGCTGGGCAGCTTGTGCGCGATTATTCTAG     31
                                        |||||.||||||.|||||||.|||||..||.
RBAM_036020__    651 GCTTGTGCTGCCGTCCATCATGCTCGGCAGCCTGTGCGCCATTATGTTAT    700

BSNT_05935        32 CGGGATTGCTGAACCGAATCGGAAAGAAA---AAACCGGAATGGACAGGC     78
                     ||||.||||||||....|||||   ||||   ||||||||||||||.|||
RBAM_036020__    701 CGGGTTTGCTGAATGTCATCGG---GAAACGCAAACCGGAATGGACGGGC    747

BSNT_05935        79 AACGGCAAAGTGGA--------------CCGCTCCGAAGAAGAGTCCCCT    114
                     |||||.||.||.||              |||||||               
RBAM_036020__    748 AACGGGAAGGTTGATAAGTCTGATCATTCCGCTCC---------------    782

BSNT_05935       115 GCGC--TGGAGGAATCACAAAGCGGACAGCAAATGTTCAACCTTT-----    157
                      |||  ||||      |||     |.|.||.||||.|.||.|.||     
RBAM_036020__    783 -CGCATTGGA------ACA-----GCCGGCCAATGATAAAACGTTTGATT    820

BSNT_05935       158 ----CTTTATTTGCGGCAGGCGGTATCCTTGCTGTTTCTTTATACTTAGT    203
                         |||| ||.||..|.||||||||..|.||.|||||..|.||.||.||
RBAM_036020__    821 TGTCCTTT-TTCGCTTCGGGCGGTATTTTAGCGGTTTCCCTCTATTTGGT    869

BSNT_05935       204 CGGCATGCTCGCTCACGATTT-TTTCGGTTTTCCGGCACCCGTTGCCATG    252
                     |||||||||.||.||.||||| ||||.| .|||||||.||.||.|..|||
RBAM_036020__    870 CGGCATGCTGGCGCATGATTTCTTTCAG-CTTCCGGCTCCTGTCGTGATG    918

BSNT_05935       253 CTGTTACTGGCTGTTCTAATCAAGCTGTTCAGATTGGTGCCTGCCTCAAT    302
                     ||..|.||.||.|||||.||.|||||||||||..|||.|||.||.|||||
RBAM_036020__    919 CTCGTCCTTGCCGTTCTCATTAAGCTGTTCAGGCTGGCGCCGGCTTCAAT    968

BSNT_05935       303 TGAAAATGGCGCGTTTGGAGTGTCCCGCTTCTTTTCAACAGCTGTGACCT    352
                     ||||||.||.||.||.||.||.||.|||||.||.||.|||||.|||||||
RBAM_036020__    969 TGAAAACGGAGCCTTCGGCGTCTCGCGCTTTTTCTCGACAGCCGTGACCT   1018

BSNT_05935       353 ACCCGCTTCTCTTTGCGATTGGGGTATCCATGACGCCGTGGGACAAGCTT    402
                     |.|||||..|.||||||||.||.||.||.|||||.||||||||||||||.
RBAM_036020__   1019 ATCCGCTCTTATTTGCGATCGGCGTTTCAATGACACCGTGGGACAAGCTG   1068

BSNT_05935       403 GTCGCCGCTTTTAACCTCAGCAATATTATTACGATTCTGTCTGTCGTTGT    452
                     .|.||.||.||||...|||||||.||.|||||.|||.|.||..||||.||
RBAM_036020__   1069 ATTGCGGCGTTTACGATCAGCAACATCATTACCATTTTATCAATCGTCGT   1118

BSNT_05935       453 GACCATGATGGCCGTTGGCTTCTTCACTGGAAAATGGCTGAACATGTATC    502
                     .||.|||||||||||.||.||..|.||.||||||||||||||..||||.|
RBAM_036020__   1119 CACGATGATGGCCGTCGGTTTTCTGACCGGAAAATGGCTGAATCTGTACC   1168

BSNT_05935       503 CGATTGAAACCGCCATTATCAATGCGTGCCATTCTGGACAAGGCGGCACC    552
                     |||||||.||.||.|||||.|||||.||||||||.||.||.|||||||||
RBAM_036020__   1169 CGATTGAGACGGCGATTATTAATGCCTGCCATTCCGGCCAGGGCGGCACC   1218

BSNT_05935       553 GGAGACGTCGCTATTTTAAGCGCGGCGGAAAGGCTTGAGTTGATGCCGTT    602
                     ||.||||||||.||.||.|||||.||.|||.||||||||.|.||||||||
RBAM_036020__   1219 GGCGACGTCGCGATCTTGAGCGCCGCTGAACGGCTTGAGCTTATGCCGTT   1268

BSNT_05935       603 CGCCCAGGTATCTACCCGCATCGGGGGCGCGATCAC----AGTGTCCTTA    648
                     ||||||.||.||.|||.|.|||||.||.|||||.||    ||||||    
RBAM_036020__   1269 CGCCCAAGTGTCGACCAGAATCGGCGGAGCGATTACCGTGAGTGTC----   1314

BSNT_05935       649 ACCTTATTGCTGCTTCACCAGTTTTATTGA    678
                     |||.|..||||||||||.||.||.||||.|
RBAM_036020__   1315 ACCCTTCTGCTGCTTCATCAATTCTATTAA   1344


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