Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05935 and RBAM_036020
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:27
# Commandline: needle
# -asequence pep-align/BSNT_05935.1.9828.seq
# -bsequence pep-align/RBAM_036020___cimH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05935-RBAM_036020___cimH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05935-RBAM_036020___cimH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05935
# 2: RBAM_036020___cimH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 448
# Identity: 193/448 (43.1%)
# Similarity: 210/448 (46.9%)
# Gaps: 224/448 (50.0%)
# Score: 986.0
#
#
#=======================================
BSNT_05935 0 -------------------------------------------------- 0
RBAM_036020__ 1 MGELQPKLQTDSIQKQERTDNWFARAMNIRIGIIPLPIYILLFLLITVFV 50
BSNT_05935 0 -------------------------------------------------- 0
RBAM_036020__ 51 MSRDVKSDILTSIAVMSFFGFTFGQIGKSIPIVRSIGGPAILATFIPSAV 100
BSNT_05935 0 -------------------------------------------------- 0
RBAM_036020__ 101 VYYHLLPKDIITSTTEFTESSNFLYLFIAGIVVGSILGMKRETLVKAFVK 150
BSNT_05935 0 -------------------------------------------------- 0
RBAM_036020__ 151 IFIPLIAGSIAAAIVGLCVGTLLGLGFQHTLLYIVVPIMAGGVGEGAIPL 200
BSNT_05935 1 -----------------------MLGSLCAIILAGLLNRIGKKKPEWTGN 27
||||||||:|:||||.|||:|||||||
RBAM_036020__ 201 SIGYSDIMPMSQGDAFALVLPSIMLGSLCAIMLSGLLNVIGKRKPEWTGN 250
BSNT_05935 28 GKVDRSEEESPALEESQSGQQMFNLSLFAAGGILAVSLYLVGMLAHDFFG 77
||||:|:..:||||: .:..:.|:||.||:|||||||||||||||||||.
RBAM_036020__ 251 GKVDKSDHSAPALEQ-PANDKTFDLSFFASGGILAVSLYLVGMLAHDFFQ 299
BSNT_05935 78 FPAPVAMLLLAVLIKLFRLVPASIENGAFGVSRFFSTAVTYPLLFAIGVS 127
.||||.||:||||||||||.||||||||||||||||||||||||||||||
RBAM_036020__ 300 LPAPVVMLVLAVLIKLFRLAPASIENGAFGVSRFFSTAVTYPLLFAIGVS 349
BSNT_05935 128 MTPWDKLVAAFNLSNIITILSVVVTMMAVGFFTGKWLNMYPIETAIINAC 177
|||||||:|||.:||||||||:|||||||||.||||||:|||||||||||
RBAM_036020__ 350 MTPWDKLIAAFTISNIITILSIVVTMMAVGFLTGKWLNLYPIETAIINAC 399
BSNT_05935 178 HSGQGGTGDVAILSAAERLELMPFAQVSTRIGGAITVSLTLLLLHQFY 225
||||||||||||||||||||||||||||||||||||||:|||||||||
RBAM_036020__ 400 HSGQGGTGDVAILSAAERLELMPFAQVSTRIGGAITVSVTLLLLHQFY 447
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