Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05993 and RBAM_036240

See Amino acid alignment / Visit BSNT_05993 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:30
# Commandline: needle
#    -asequence dna-align/BSNT_05993.1.9828.seq
#    -bsequence dna-align/RBAM_036240.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05993-RBAM_036240.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05993-RBAM_036240.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05993
# 2: RBAM_036240
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 385
# Identity:     182/385 (47.3%)
# Similarity:   182/385 (47.3%)
# Gaps:         149/385 (38.7%)
# Score: 464.5
# 
#
#=======================================

BSNT_05993         1 ------------------TTGTTTC---AGCATATCAAGAAAT-GGCGTT     28
                                       .||.|||   |||.|.|  ||||.| .||.||
RBAM_036240        1 ATGAAAAAGAATAAGTGGCTGATTCAAGAGCTTTT--AGAATTCCGCCTT     48

BSNT_05993        29 TTTATCGAGAAACAGATCACGTGCTTGGTGCCATTTATACGATTGAGTTA     78
                     ||  .||.|||..|||               .||||.|...|||||||| 
RBAM_036240       49 TT--CCGGGAACGAGA---------------GATTTCTGTAATTGAGTT-     80

BSNT_05993        79 GCAGCTGTTTATCATTCACGTACGA------------TTGTT-----GTC    111
                        |.||||| ||.|||..|||.||            |||||     .||
RBAM_036240       81 ---GGTGTTT-TCCTTCGAGTATGAACATCAGCTCATTTGTTTGAGGCTC    126

BSNT_05993       112 ATATTCAAAGACGTTTCAGTCGTTACGATACGAGATATGGAGACCCTAAC    161
                     ||||.||||||||||||...||||...|||..|||.|||||||       
RBAM_036240      127 ATATGCAAAGACGTTTCTTCCGTTCAAATAAAAGAAATGGAGA-------    169

BSNT_05993       162 GGACCTGTCTGATGGACTTCTCCA--TATTGAAACGCAA-----CC----    200
                      |.|.|| |||.|||     |.||  .||||.||  |||     ||    
RBAM_036240      170 -GTCATG-CTGCTGG-----TTCAGGCATTGTAA--CAATTGATCCTGCT    210

BSNT_05993       201 -----------------ACAAGGTATGTACCTTGTGGAAGAATGGGAGGA    233
                                      |||  |.|| |..||.|||||.||.||||||.|
RBAM_036240      211 GCTGACGGAGATGAGGGACA--GCAT-TTTCTCGTGGAGGAGTGGGAGAA    257

BSNT_05993       234 GCAGACATTCCGCTTTTGTTGCCGGCAATATGAGGTGATGGAAGTTGAAT    283
                     .||.||.||||||||||.||||||.||||||||      .|.||.||||.
RBAM_036240      258 CCAAACGTTCCGCTTTTATTGCCGTCAATATGA------AGCAGCTGAAA    301

BSNT_05993       284 AG---------------------------------    285
                     ||                                 
RBAM_036240      302 AGAAGGAGGCACAAAATGGAACGGCACAAACATGA    336


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