Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06069 and RBAM_036530
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:33
# Commandline: needle
# -asequence dna-align/BSNT_06069___yxeE.1.9828.seq
# -bsequence dna-align/RBAM_036530___yxeE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06069___yxeE-RBAM_036530___yxeE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06069___yxeE-RBAM_036530___yxeE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06069___yxeE
# 2: RBAM_036530___yxeE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 408
# Identity: 269/408 (65.9%)
# Similarity: 269/408 (65.9%)
# Gaps: 63/408 (15.4%)
# Score: 829.0
#
#
#=======================================
BSNT_06069___ 1 ATGAACCCTTATCAATATTACAGCCCTCAGCTGCCT-----------CAG 39
||||||||.|||||.||.||||.|||.| |||||| |||
RBAM_036530__ 1 ATGAACCCATATCAGTACTACACCCCGC--CTGCCTATTTCCCTCAGCAG 48
BSNT_06069___ 40 CAGGAACCTTACTATAG----CCACTATGAGTACAATCCTTATCCGCAGC 85
|||||| |||.| || ||.|..||||||..|.||.||||.|||||
RBAM_036530__ 49 CAGGAA---TACGA-AGTGAACCGCGTTGAGTATGAGCCATATCAGCAGC 94
BSNT_06069___ 86 AGG---------ATGTATACGATC---CATACCAAATGGACAGACAGCCG 123
||| || |||.||..| ||..||.|| ||..|.||||||
RBAM_036530__ 95 AGGAAAGCTATTAT-TATGCGCCCCCTCAGTCCGAA--GAGCGGCAGCCG 141
BSNT_06069___ 124 GCA---TTGGAAAGAAGAATCG--CAGCACTTGAACGGCAAAATGAACAG 168
.|| ||.|||.|.|||.||| ||| ||||||.|.|||||.|...||
RBAM_036530__ 142 ACAGGTTTAGAACGGAGAGTCGCCCAG--CTTGAAAGACAAAACGCCGAG 189
BSNT_06069___ 169 CAGTCAAGAGAATTAACCCG--TCTGACAAACGAAGACCGCCGTCAAAAT 216
||..|.|||||..|.||||| |||.|||| |||||||..||.|||||.
RBAM_036530__ 190 CAAACGAGAGAGCTCACCCGCCTCTCACAA--GAAGACCAGCGCCAAAAC 237
BSNT_06069___ 217 CGGGAAATTGCACG-----GATTGCCGAACAGGTCAATCAGTTAAGCCAG 261
|||||||| |||| ||.| ||.|||.|||..|.|.|.||||||
RBAM_036530__ 238 CGGGAAAT--CACGCGTATGAAT---GAGCAGATCAGACGGCTGAGCCAG 282
BSNT_06069___ 262 GCTGTTGAACGCCATACACGCCGCCTAAATCGGCTCAATCAGCGCCTCCG 311
.|..|||||..||||||.||||||.||||.||..|.|||||||||||.||
RBAM_036530__ 283 TCCATTGAAATCCATACCCGCCGCTTAAACCGTTTGAATCAGCGCCTGCG 332
BSNT_06069___ 312 TACAGTAGAAAACCGGCTGAATATCCCATTT---ACTGCAGGGGAAGGCG 358
..||||.||||||.|.||.|||||.||.||| .||.|| |||||||
RBAM_036530__ 333 CGCAGTCGAAAACAGACTCAATATTCCTTTTCACGCTACA---GAAGGCG 379
BSNT_06069___ 359 GTTTCTGA 366
|.||||||
RBAM_036530__ 380 GCTTCTGA 387
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