Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04808 and RBAM_037010
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:20
# Commandline: needle
# -asequence dna-align/BSNT_04808___pucE.1.9828.seq
# -bsequence dna-align/RBAM_037010.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04808___pucE-RBAM_037010.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04808___pucE-RBAM_037010.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04808___pucE
# 2: RBAM_037010
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 606
# Identity: 281/606 (46.4%)
# Similarity: 281/606 (46.4%)
# Gaps: 231/606 (38.1%)
# Score: 552.0
#
#
#=======================================
BSNT_04808___ 1 ------------------ATGGACGTAAAAGAGGCCGGGCCATTTCCTGT 32
.||.|.||||| .|||..||
RBAM_037010 1 ATGTCTGATCCTATTACGTTGAAAGTAAA--TGGCGAGG----------- 37
BSNT_04808___ 33 AAAAAAGGAACAGTTCCGGATGACCGTGAATGGGCAGGAGTGGGAGGTTG 82
|||| ||| |||.||.||.| |||.|| .||..|..|||
RBAM_037010 38 ---AAAG--ACA------GATTACGGTCA---GGCCGG-CTGATACTTTG 72
BSNT_04808___ 83 ----CTGCCGTTC--CTACGACACATCTGAGTGAC--CTGCTTAGAAAGG 124
.|||..||| ||.||.| ||.||.|.|| .||| |||
RBAM_037010 73 TTATTTGCTCTTCGTCTTCGTC---TCGGATTAACTGGTGC----AAA-- 113
BSNT_04808___ 125 AATTTCAGCTGACCGGGACAAAGGTGTCCTGC-------GGAATCGGCCG 167
|||||| |||| ||.||
RBAM_037010 114 -----------ACCGGG-----------CTGCTTAAATGGGGAT------ 135
BSNT_04808___ 168 CTGCGGAGCCTGCTCTATTTTAATCGACG----------GAAAACTGGC- 206
|||||.|||||..|..|.||||..|||| ||||.||.||
RBAM_037010 136 -TGCGGCGCCTGTACGGTATTAACGGACGGGGTGCCGATGAAATCTTGCT 184
BSNT_04808___ 207 CAATGCGTGTATGACCATGGCTTATCAAGTGGACGGCCACTCCATTACAA 256
.|||||.|| .||| ..|||.|||.||..|...||||||.|
RBAM_037010 185 TAATGCTTG--------CGGC---AGAAGGGGAAGGAAAGGACATTACGA 223
BSNT_04808___ 257 CAATCGAGGGCGTACAACAAGAGGAACTGGAT--ATCTGC-----CAAAC 299
||||.||.|| ||| ||| ||..|| ||||.
RBAM_037010 224 CAATTGAAGG---------------ACT-GATCAATACGCCGATTCAAAA 257
BSNT_04808___ 300 CGCTTTTTTGGAAGAAGGAGGCTTCCAATGCGGCTACTGTACCCCAGG-- 347
.||||||.|.|||.||...|..||.||||||||.||.||.||.||.||
RBAM_037010 258 GGCTTTTATTGAAAAATTCGCGTTTCAATGCGGTTATTGCACACCGGGTT 307
BSNT_04808___ 348 ----AATGATAATTGCGCTTAAAGCGCTGTTTCGGGAAACCCCTCAACCT 393
.||| ||||| |.|.|| |||.|.||| |
RBAM_037010 308 TTCTCATG--AATTG----TCATGC----TTTAGTGAA-----------T 336
BSNT_04808___ 394 TCTGA--CGAA-------GAT------ATAGAAGAA-GGGCTGGCGGGGA 427
.|||| |||| ||| ||| ||.|| .||||||.|...|
RBAM_037010 337 ACTGAGCCGAATGCAAGTGATGACACGATA-AACAATTGGCTGGAGTCCA 385
BSNT_04808___ 428 ATTTGTGCCGGTGTACCGGGTATGGCGGGATTATGCGGTCAGCTTGCAGG 477
||.|.|||.|.|||||.||.|||.|.|.|||| |
RBAM_037010 386 ATATTTGCAGATGTACGGGTTATAGGGAGATT-----------------G 418
BSNT_04808___ 478 ATTAGAAGAGAGTTGAA--CG---------GAGGGAGACGGGAGTCCGGC 516
| |||||.| |||.|| || .|||||.||.|
RBAM_037010 419 A--AGAAGCG-GTTAAATCCGTTTTACATACAGGGAAACCG--------- 456
BSNT_04808___ 517 TTTTAA 522
|||
RBAM_037010 457 ---TAA 459
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