Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06261 and RBAM_037310
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:42
# Commandline: needle
# -asequence dna-align/BSNT_06261.1.9828.seq
# -bsequence dna-align/RBAM_037310.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06261-RBAM_037310.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06261-RBAM_037310.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06261
# 2: RBAM_037310
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1405
# Identity: 595/1405 (42.3%)
# Similarity: 595/1405 (42.3%)
# Gaps: 635/1405 (45.2%)
# Score: 900.5
#
#
#=======================================
BSNT_06261 1 ATGGAACA--------TAGATATAGTTTAAATA-----CTTCCATAAGAT 37
|.|||.| |.||||.|| |||.| ||| |.|
RBAM_037310 1 -TTGAAGAACTTGATCTTGATACAG---AAACAGCAAGCTT------GGT 40
BSNT_06261 38 GCGAC----CTATTAAATGACG-GACT-------------AGTTGTTAT- 68
||..| |||.|||| |.|| |||| ||||.||||
RBAM_037310 41 GCATCGTTGCTAGTAAA-GCCGTGACTCCCCTCATTGGGGAGTTATTATC 89
BSNT_06261 69 --------GGT-TGCCGATAATG--AAC---CTGTA------------TT 92
||| ||.| ||.||| ||| ||||| ||
RBAM_037310 90 TTTCAGGGGGTATGTC-ATGATGTCAACGGACTGTAAGCGCTGGAAGTTT 138
BSNT_06261 93 AATTACA----GAAGGAATTGATGAATACCTAGA--------------AT 124
||..||| |.||| ||.|| |||||.| ||
RBAM_037310 139 AAAGACAGCGTGCAGG---TGCTG---ACCTACACGGCGCATATTATCAT 182
BSNT_06261 125 TC---------------TTAAGTATATTTCGCTTTCCAGT----TTCCAA 155
|| ||||| .||.|||.|.|.||| | |||
RBAM_037310 183 TCAATATCGAAAGGCGATTAAG---CTTGCGCATACGAGTGAGAT--CAA 227
BSNT_06261 156 AGAAATAG--GATTAGAACAACTGAACAAT--GCATTTTATGTGAATAAT 201
|| || |.|| ||||..||| ||.|| || ||||||.|
RBAM_037310 228 AG----AGGCGGTT-GAACGGCTG-ACCATCGGC------TGTGAAAA-- 263
BSNT_06261 202 AGTAACTACAATAAAATATTTGAGTTTTC-----------------AATC 234
|||| |||.|||| ||.|
RBAM_037310 264 -------ACAA----------GAGCTTTCTGATCTTCTGGGAGAGGAAGC 296
BSNT_06261 235 GAGAATAACA-TTATTAAAACGTATGACGATAATG---TTGACTCGATTA 280
|.||| |.|| ||.|| || ||| ||.||||| ||| |||
RBAM_037310 297 GGGAA-ACCAGTTTTT----CG-ATG-CGTTAATGAAATTG----GAT-- 333
BSNT_06261 281 AGACTTTATCAGATTATCAATTACAAAAATTTGATCGAC----AA----- 321
.|||||..|| |.|.||..||||| ||.| ||
RBAM_037310 334 --GCTTTAATAG---AGCCATGGCAAAA-------CGGCCGTGAAGGCCG 371
BSNT_06261 322 -ATCAAGTCTTTTAATACTCT-AAAAG--GCTTAA--ATTATTCAGATGC 365
|||| || ||||| |||..| ||| ||.|||
RBAM_037310 372 CATCA--------------CTGAAAAGCAGCTGTACCATT-TTGAGA--- 403
BSNT_06261 366 TCATGGTATGCAATGCAAAC----TTGTGAACTCTAAAATAATAATTA-- 409
.||.|||...|||| .|.||| ||.||||.| .||||
RBAM_037310 404 ------AATACAACCAAAACCCCAATCTGA--TCCAAAAGA--GATTAGA 443
BSNT_06261 410 --------------------TAGGTGTTGGTGGAATTGGAAGTTATTTAT 439
|.|||.|.||.||..|.|||
RBAM_037310 444 CGGCAGCAGGGCAGCGATCGTGGGTCTGGGGGGCGTCGGA---------- 483
BSNT_06261 440 CACTATC--TCTAGCATCAA------TGGGCG------TTG-AGGACATG 474
||.||| ||| |||| |.|||| ||| ||.|..|.
RBAM_037310 484 -ACGATCATTCT----TCAAAACCTTTTGGCGGCGGGCTTGCAGCATTTT 528
BSNT_06261 475 GTTATCATCGATAAAGATG---------------------------AAAT 497
.||.||||.|||...|||| ||.|
RBAM_037310 529 ATTCTCATTGATTTCGATGCCGTATCAGTACATAACCTGAACAGACAATT 578
BSNT_06261 498 CGAGT-TAAGCAATAC--CTCTAGGCAAATTCTTTAT-TCAGA------A 537
||..| |||..||| | ||.||||||||||....|| ||||| |
RBAM_037310 579 CGTCTATAATAAAT-CTTCTGTAGGCAAATTAAAGATCTCAGAATGCAGA 627
BSNT_06261 538 GATGATATAGGGAAAAGCAAGGT-TCAA----------GTTGCTGCAAGA 576
|||.||||.|.| ||| |||| |..||.||
RBAM_037310 628 GATTATATTGCG--------GGTATCAATCCCAATGCGGACGCAGC---- 665
BSNT_06261 577 AAATTAAAAAAATACAATAA--AAACTTAAA------------------- 605
|.|| |||.|||| ||| |||.|
RBAM_037310 666 -ACTT-------TACCATAAGGAAA-TTACACAGCCGCAGGACCTGCGTG 706
BSNT_06261 606 -ATTACATACATATGAAAAATTTATAACTACAATTGATGATCTTCAGATT 654
.|||.||.|.||||| ||||||| |||.|||.|
RBAM_037310 707 TGTTAGATCCGTATGA---------------AATTGAT-ATCGTCATA-- 738
BSNT_06261 655 ATCAGAGACCATCATGATGCAGATCTGATAGTTCTGTGTGCTGATACCCC 704
.||||.| ||||.| |.|||
RBAM_037310 739 ---------------AATGCCG--CTGACA---------------AACCC 756
BSNT_06261 705 CAGAGGAGAAATCCAATACATGGTTGATCAAAT---TTCACAAG-ATT-T 749
||.| ||||...|| ||| ||.||..| ||| |
RBAM_037310 757 CATA-------------ACATTTCTG----AATGGGTTTACCGGTATTGT 789
BSNT_06261 750 AAAGATCCCTTGGA------TGTTT-----------TTTGGGC--CTTAT 780
||.||.| ||| .|||| |.|.||| ||
RBAM_037310 790 AAGGAGC----GGAATATCGCGTTTATGACCGGGGGTGTCGGCAGCT--- 832
BSNT_06261 781 AATCACTCAAAAGTCGTAAT-AGGACCGCTAATTATACCTGGGAAGACAA 829
|||...|.| ||| .||.||.||..|.|..||||
RBAM_037310 833 ------TCAGCGGCC--AATGGGGGCCTCTGCTCACGCCTG--------- 865
BSNT_06261 830 AAAGTTAT----------TCAGATATTTTCCCAAAACTAATGGTGAAAAA 869
||...||| |||..||| .|||| |||.|
RBAM_037310 866 AATCCTATCAATCCGGCGTCACCTAT-----GAAAA---------AAACA 901
BSNT_06261 870 TGATTGTCG---TACTGAAATTATTA-----ATGA-------AAA--TTT 902
||...|.|| |.||| ||.|.||| |||| ||| ||.
RBAM_037310 902 TGCCGGCCGGACTTCTG-AACTGTTACCCCGATGAACCGATCAAAGGTTC 950
BSNT_06261 903 TATAGCATCTA-------TAATAGATCCT--TTTAATGGTATAGCAGCTA 943
..|||.|.|.| ||.||.||||| |||
RBAM_037310 951 CTTAGGAGCGACAAACGGTATTATATCCTCGTTT---------------- 984
BSNT_06261 944 AAATGGCTTCAATAGAAATTTTAAAGTATATTACAGGC------------ 981
|||.| ||| .||.|||.|.|..||..||.|||||
RBAM_037310 985 --ATGTC-TCA--TGACATTATCACATACCTTGCAGGCGGAAGCCCGAAA 1029
BSNT_06261 982 TACCATATGAATTCCATTGAACAAAAGCGGAT---CCTGTTAGATACTGA 1028
|.|| |||||.|| ||.|| |||| ||...|||
RBAM_037310 1030 TCCC---TGAATACC------------CGCATCGGCCTG---GACTTTGA 1061
BSNT_06261 1029 ------TGATTGGATTATTGAAAAGAGG--TTATTAGATTGA-------- 1062
|.|| ||||..||||.||.| ||.|.|.|..||
RBAM_037310 1062 CGGCCTTCAT---ATTACAGAAACGAAGCTTTCTCAAAAGGAAAGCGCTT 1108
BSNT_06261 1062 ----- 1062
RBAM_037310 1109 TATGA 1113
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