Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_06246 and RBAM_037790

See Amino acid alignment / Visit BSNT_06246 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:41
# Commandline: needle
#    -asequence dna-align/BSNT_06246___yybA.1.9828.seq
#    -bsequence dna-align/RBAM_037790___yybA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06246___yybA-RBAM_037790___yybA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06246___yybA-RBAM_037790___yybA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06246___yybA
# 2: RBAM_037790___yybA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 454
# Identity:     377/454 (83.0%)
# Similarity:   377/454 (83.0%)
# Gaps:           2/454 ( 0.4%)
# Score: 1565.0
# 
#
#=======================================

BSNT_06246___      1 ATGAATGATATTTTGCGTGAGATCGGCATGATAGCAAGAGCGTTGGATTC     50
                     ||||.||||||||||||.||.|||||||||||.|||.|.||..|||||||
RBAM_037790__      1 ATGACTGATATTTTGCGGGAAATCGGCATGATCGCACGGGCACTGGATTC     50

BSNT_06246___     51 CATAAGCAACATCGAATTTAAAGATTTGGACTTAACAAGAGGGCAGTATC    100
                     |||.|||||.||.|||||||||||.||.|||.||||||.|||||||||||
RBAM_037790__     51 CATCAGCAATATTGAATTTAAAGAATTAGACCTAACAAAAGGGCAGTATC    100

BSNT_06246___    101 TCTATCTCGTACGTATATACGAAAATCCGGGAATTATTCAAGAAAAATTG    150
                     ||||.||.||.|||||||..|||||.||||||.|.||.||.||||||.||
RBAM_037790__    101 TCTACCTTGTGCGTATATGTGAAAACCCGGGAGTGATACAGGAAAAAGTG    150

BSNT_06246___    151 GCGGAAATGATAAAAGTGGACCGGACAACGGCCGCGCGGGCCATTAAGAA    200
                     |||||||||||.|||||.|||||.|||||.||.|||.||||.||.||.||
RBAM_037790__    151 GCGGAAATGATTAAAGTCGACCGAACAACAGCGGCGAGGGCAATCAAAAA    200

BSNT_06246___    201 GCTGGAAATGCAGGGATTTATTCAAAAATTGCCGGATGAGCAAAATAAAA    250
                     .||||||||.|||||.||||||.||||....||.|||||.||||||||||
RBAM_037790__    201 ACTGGAAATACAGGGGTTTATTGAAAAGCGTCCTGATGATCAAAATAAAA    250

BSNT_06246___    251 AAATAAAAAAACTGTTCCCGACTGAGAAAGGGAAAAAGGTATATCCATTG    300
                     ||||||||||||||||.||||||||.|||||||.||||||.|||||.||.
RBAM_037790__    251 AAATAAAAAAACTGTTTCCGACTGAAAAAGGGAGAAAGGTTTATCCGTTA    300

BSNT_06246___    301 TTAAGAAGAGAAGGAGAACATTCCACGGAAGTAGCCTTGTCCGGTTTTAC    350
                     ||...||||||||||||.|||||..||||.||.|||.|||||||.|||||
RBAM_037790__    301 TTGCAAAGAGAAGGAGAGCATTCTGCGGAGGTGGCCCTGTCCGGCTTTAC    350

BSNT_06246___    351 TTCAGAGGAAAAGGAAACCA-TTTCTGCACTCCTTCATAGAGTGAGGAAG    399
                     .||.||||||||.||||||| ||||.|| ||.|||||..|.|||||.||.
RBAM_037790__    351 ATCTGAGGAAAAAGAAACCATTTTCAGC-CTTCTTCAGCGGGTGAGAAAA    399

BSNT_06246___    400 AATATAGAACGTGATTGGGAATATGTGAAGAAGGGGAACAAAAGGGATTA    449
                     ||||||||||.|||||||||||.|||||||||||||||.|||||.|||||
RBAM_037790__    400 AATATAGAACATGATTGGGAATTTGTGAAGAAGGGGAATAAAAGAGATTA    449

BSNT_06246___    450 TTAA    453
                     ||||
RBAM_037790__    450 TTAA    453


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.