Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06265 and RBAM_037940

See Amino acid alignment / Visit BSNT_06265 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:42
# Commandline: needle
#    -asequence dna-align/BSNT_06265.1.9828.seq
#    -bsequence dna-align/RBAM_037940___ccpB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06265-RBAM_037940___ccpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06265-RBAM_037940___ccpB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06265
# 2: RBAM_037940___ccpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 948
# Identity:     339/948 (35.8%)
# Similarity:   339/948 (35.8%)
# Gaps:         513/948 (54.1%)
# Score: 1140.0
# 
#
#=======================================

BSNT_06265         1 ATGGCAAATATAAAAGAGATCGCAAGACTGGCAAATGTATCTGTTTCGAC     50
                     ||||||||||||||||||||.||.|.||||||.|||||.||.||..|.||
RBAM_037940__      1 ATGGCAAATATAAAAGAGATTGCGAAACTGGCGAATGTGTCGGTGGCCAC     50

BSNT_06265        51 TGTCTCGCGTGTATTGAATCATCATCCGTATGTGTCTGA--AGAAAAGAG     98
                     .||.||.||.|||||.||.|..||.|||||.||.|||||  |||||||  
RBAM_037940__     51 CGTATCACGCGTATTAAACCGACACCCGTACGTATCTGAGGAGAAAAG--     98

BSNT_06265        99 AAAG---CTTGTTCAACAAGTCATGAAGGATTTGGATTATACACCAAATC    145
                        |   |||||..|.|||||.||||||||..||||||||||.||.||||
RBAM_037940__     99 ---GCGTCTTGTGAATCAAGTGATGAAGGAGCTGGATTATACCCCTAATC    145

BSNT_06265       146 GAACCGCAATCGATCTCATTCGCGGGAAAACCCATACGGTCGGTGTGATT    195
                     |||||||.||.|||||.||||||||.||.|||.||||..||||.||||||
RBAM_037940__    146 GAACCGCCATTGATCTGATTCGCGGAAAGACCAATACAATCGGCGTGATT    195

BSNT_06265       196 CTGCCTTATAGCGATCATCCCTGCTTTGATAAAATCGTTAACGGAATCAC    245
                     .||||.||.|||||.||||||||||||||.|||||.||.|||||.|||||
RBAM_037940__    196 TTGCCGTACAGCGACCATCCCTGCTTTGACAAAATTGTAAACGGTATCAC    245

BSNT_06265       246 CAAGGCGGCTTTTCAAAATGAGTATGCAACGACCCTCCTCCCCACCAATT    295
                     .||||..||.|||....||||.||.|..||.|||||.|||||||||||.|
RBAM_037940__    246 GAAGGAAGCGTTTGCCCATGATTACGTGACAACCCTTCTCCCCACCAACT    295

BSNT_06265       296 ATAACCCCGCTATTGAAATCAAATATTTAGAGCTGTTAAGAATGAAGAAA    345
                     ||.||||||||||.||.||.|..|||||.||.|||.|.|.||||||.||.
RBAM_037940__    296 ATGACCCCGCTATAGAGATGACCTATTTCGAACTGCTGAAAATGAAAAAG    345

BSNT_06265       346 ATAGACGGTCTTATCATTACATC-----------------------CCGT    372
                     ||.|||||.||.||..|.||.||                       ||||
RBAM_037940__    346 ATTGACGGACTGATTGTCACGTCCCGCGCGAATGAATGGGAGACCGCCGT    395

BSNT_06265       373 GCCCAACTTGGGGAAAGCTC------TCG-------AAAT---CA-CATA    405
                     |||..||.|||...|.|.||      |||       |.||   || |||.
RBAM_037940__    396 GCCTTACCTGGAATACGGTCCCATTGTCGCTTGTGAATATACACAGCATC    445

BSNT_06265       406 AAGCAGA---------CTT-TCATGA---------AGCATTGTACAG---    433
                     ||| |||         ||| |.||||         ||||   |||||   
RBAM_037940__    446 AAG-AGATTCCCTGCGCTTATAATGACAGGCAGGCAGCA---TACAGAGA    491

BSNT_06265       434 CTGCTTACTGA---------------------------------------    444
                     ..||||..||.                                       
RBAM_037940__    492 AAGCTTTTTGTATTTGAAAAACCGCGGACATCAAGACGTTGCTTTTACAT    541

BSNT_06265       444 --------------------------------------------------    444
                                                                       
RBAM_037940__    542 GTGTGCGGGAAGCGGAAAAAAGCCCGAGTACGGCCGACAAGGTAACCGCA    591

BSNT_06265       444 --------------------------------------------------    444
                                                                       
RBAM_037940__    592 TATAAGGCGGTTTTCGGCTCTCTTGATGAAACCCGCATTCTGGTCGGATG    641

BSNT_06265       444 --------------------------------------------------    444
                                                                       
RBAM_037940__    642 CCATGATATGGACGACGGAAAGCGAGCGGGTGAGCACTTCTGGGGTTTCG    691

BSNT_06265       444 --------------------------------------------------    444
                                                                       
RBAM_037940__    692 ACAAGGCGCCGACGGCCATCTATGCGCACAGTGATGACGTGGCTGCCGGC    741

BSNT_06265       444 --------------------------------------------------    444
                                                                       
RBAM_037940__    742 TTGTACCAGTTTGCGAAAGAACAGAAATGGGACGCGGAGATCATCGGCGA    791

BSNT_06265       444 --------------------------------------------------    444
                                                                       
RBAM_037940__    792 GGGAAATCTGAGCGTCAGCCGGGCATTGAATATTCCATCCCTGGAACTTC    841

BSNT_06265       444 --------------------------------------------------    444
                                                                       
RBAM_037940__    842 ATTTGGAACGGGTCGGTAAGGAAGCATTTTTATTGTTTTTTCACGAAGAA    891

BSNT_06265       444 ------------------------------------------------    444
                                                                     
RBAM_037940__    892 ACGGCTAAAAAACAAATTATGCATCAATTTCAGCGGAAAAAGTCTTGA    939


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