Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00684 and BSU03890

See DNA alignment / Visit BSNT_00684 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:16:59
# Commandline: needle
#    -asequence pep-align/BSNT_00684___gabR.1.22522.seq
#    -bsequence pep-align/BSU03890___gabR.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00684___gabR-BSU03890___gabR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00684___gabR-BSU03890___gabR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00684___gabR
# 2: BSU03890___gabR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 479
# Identity:     475/479 (99.2%)
# Similarity:   477/479 (99.6%)
# Gaps:           0/479 ( 0.0%)
# Score: 2438.0
# 
#
#=======================================

BSNT_00684___      1 MDITITLDRSERADYIYQQIYQKLKKEILSRNLLPHSKVPSKRELAENLK     50
                     |||||||||||:||||||||||||||||||||||||||||||||||||||
BSU03890___ga      1 MDITITLDRSEQADYIYQQIYQKLKKEILSRNLLPHSKVPSKRELAENLK     50

BSNT_00684___     51 VSVNSVNSAYQQLLAEGYLYAIERKGFFVEELDMFSAEEHPPFALPDDLK    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03890___ga     51 VSVNSVNSAYQQLLAEGYLYAIERKGFFVEELDMFSAEEHPPFALPDDLK    100

BSNT_00684___    101 EIHIDQSDWISFSHMSSDTDHFPIKSWFRCEQKAASRSYRRLGDMSHPQG    150
                     ||||||||||||||||||||||||||||||||||||||||.|||||||||
BSU03890___ga    101 EIHIDQSDWISFSHMSSDTDHFPIKSWFRCEQKAASRSYRTLGDMSHPQG    150

BSNT_00684___    151 IYEVRAAITRLISLTRGVKCRPEQMIIGAGTQVLMQLLTELLPKEAVYAM    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03890___ga    151 IYEVRAAITRLISLTRGVKCRPEQMIIGAGTQVLMQLLTELLPKEAVYAM    200

BSNT_00684___    201 EEPGYRRMYQLLKNAGKQVKTIMLDEKGMSIAEITRQQPDVLVTTPSHQF    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03890___ga    201 EEPGYRRMYQLLKNAGKQVKTIMLDEKGMSIAEITRQQPDVLVTTPSHQF    250

BSNT_00684___    251 PSGTIMPVSRRIQLLNWAAEEPRRYIIEDDYDSEFTYDVDSIPALQSLDR    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03890___ga    251 PSGTIMPVSRRIQLLNWAAEEPRRYIIEDDYDSEFTYDVDSIPALQSLDR    300

BSNT_00684___    301 FQNVIYMGTFSKSLLPGLRISYMVLPPELLRAYKQRGYDLQTCSSLTQLT    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03890___ga    301 FQNVIYMGTFSKSLLPGLRISYMVLPPELLRAYKQRGYDLQTCSSLTQLT    350

BSNT_00684___    351 LQEFIESGEYQKHIKKMKQHYKEKRERLITALEAEFSGEVTVKGANAGLH    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03890___ga    351 LQEFIESGEYQKHIKKMKQHYKEKRERLITALEAEFSGEVTVKGANAGLH    400

BSNT_00684___    401 FVTEFDTRRTEQDILSHAAGLQLEIFGMSRFNLKENKRQTGRPALIIGFA    450
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03890___ga    401 FVTEFDTRRTEQDILSHAAGLQLEIFGMSRFNLKENKRQTGRPALIIGFA    450

BSNT_00684___    451 RLKEEDVQAGVQRLFKAVYGHKKIPVTGD    479
                     ||||||:|.||||||||||||||||||||
BSU03890___ga    451 RLKEEDIQEGVQRLFKAVYGHKKIPVTGD    479


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