Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00909 and RBAM_005290

See DNA alignment / Visit BSNT_00909 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:37
# Commandline: needle
#    -asequence pep-align/BSNT_00909___ydeM.1.9828.seq
#    -bsequence pep-align/RBAM_005290___ydeM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00909___ydeM-RBAM_005290___ydeM.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00909___ydeM-RBAM_005290___ydeM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00909___ydeM
# 2: RBAM_005290___ydeM
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 141
# Identity:     104/141 (73.8%)
# Similarity:   126/141 (89.4%)
# Gaps:           0/141 ( 0.0%)
# Score: 541.0
# 
#
#=======================================

BSNT_00909___      1 MKLDEFTIGQVFKTKSLKVSKDDIMRFAGEFDPQYMHVDEEKASKGRFNG     50
                     ||||||||||||:|||.:::|::||.||..:||||||::||||..|||||
RBAM_005290__      1 MKLDEFTIGQVFQTKSFELTKENIMNFAEVYDPQYMHLNEEKAKMGRFNG     50

BSNT_00909___     51 IIASGIQTLAISFKLWIEEGFYGDDIIAGTEMNHMIFIKPVYPDDELFTI    100
                     |||||||||:|:||||||||.:.|||||||.||::.|:.||||:|:|.||
RBAM_005290__     51 IIASGIQTLSITFKLWIEEGRHEDDIIAGTGMNNIKFLAPVYPNDKLHTI    100

BSNT_00909___    101 VKVLDKQPKRNELGILTVLLSTYNQKEVKVFEGELSVLIKR    141
                     |||:||:|.:::.||||||||||||||.|||||||||||||
RBAM_005290__    101 VKVIDKKPNKSQTGILTVLLSTYNQKEEKVFEGELSVLIKR    141


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